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DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625
作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载:4/0  |  提交时间:2024/05/20
Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs  
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9
作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi
收藏  |  浏览/下载:8/0  |  提交时间:2023/12/04
immune checkpoints inhibitors  deep learning  graph neural networks  
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文
FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23
作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui
收藏  |  浏览/下载:29/0  |  提交时间:2022/06/21
compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature  
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W459-W468
作者:  Zhang, Yuwei;  Bu, Dechao;  Huo, Peipei;  Wang, Zhihao;  Rong, Hao;  Li, Yanguo;  Liu, Jingjia;  Ye, Meng;  Wu, Yang;  Jiang, Zheng;  Liao, Qi;  Zhao, Yi
收藏  |  浏览/下载:37/0  |  提交时间:2021/12/01
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W317-W325
作者:  Bu, Dechao;  Luo, Haitao;  Huo, Peipei;  Wang, Zhihao;  Zhang, Shan;  He, Zihao;  Wu, Yang;  Zhao, Lianhe;  Liu, Jingjia;  Guo, Jincheng;  Fang, Shuangsang;  Cao, Wanchen;  Yi, Lan;  Zhao, Yi;  Kong, Lei
收藏  |  浏览/下载:56/0  |  提交时间:2021/12/01
Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 卷号: 19, 期号: 3, 页码: 377-393
作者:  Luo, Haitao;  Bu, Dechao;  Shao, Lijuan;  Li, Yang;  Sun, Liang;  Wang, Ce;  Wang, Jing;  Yang, Wei;  Yang, Xiaofei;  Dong, Jun;  Zhao, Yi;  Li, Furong
收藏  |  浏览/下载:21/0  |  提交时间:2022/12/07
Long non-coding RNA  Transcriptome assembly  Metacell  Immune regulation  Functional annotation  
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: D1, 页码: D165-D171
作者:  Zhao, Lianhe;  Wang, Jiajia;  Li, Yanyan;  Song, Tingrui;  Wu, Yang;  Fang, Shuangsang;  Bu, Dechao;  Li, Hui;  Sun, Liang;  Pei, Dong;  Zheng, Yu;  Huang, Jianqin;  Xu, Mingqing;  Chen, Runsheng;  Zhao, Yi;  He, Shunmin
收藏  |  浏览/下载:38/0  |  提交时间:2021/12/01
FangNet: Mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 页码: 62-71
作者:  Bu, Dechao;  Xia, Yan;  Zhang, JiaYuan;  Cao, Wanchen;  Huo, Peipei;  Wang, Zhihao;  He, Zihao;  Ding, Linyi;  Wu, Yang;  Zhang, Shan;  Gao, Kai;  Yu, He;  Liu, Tiegang;  Ding, Xia;  Gu, Xiaohong;  Zhao, Yi
收藏  |  浏览/下载:37/0  |  提交时间:2021/12/01
Formulas  Herb  Symptom  TCM  
DeepOmix: A scalable and interpretable multi-omics deep learning framework and application in cancer survival analysis 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 页码: 2719-2725
作者:  Zhao, Lianhe;  Dong, Qiongye;  Luo, Chunlong;  Wu, Yang;  Bu, Dechao;  Qi, Xiaoning;  Luo, Yufan;  Zhao, Yi
收藏  |  浏览/下载:43/0  |  提交时间:2021/12/01
Multi-omics  Deep learning  Survival analysis  Prognosis prediction  Interpretable model  
SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping 期刊论文
NUCLEIC ACIDS RESEARCH, 2019, 卷号: 47, 期号: D1, 页码: D1110-D1117
作者:  Wu, Yang;  Zhang, Feilong;  Yang, Kuo;  Fang, Shuangsang;  Bu, Dechao;  Li, Hui;  Sun, Liang;  Hu, Hairuo;  Gao, Kuo;  Wang, Wei;  Zhou, Xuezhong;  Zhao, Yi;  Chen, Jianxin
收藏  |  浏览/下载:267/0  |  提交时间:2019/08/16