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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：0/0  |  提交时间：2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
Revolutionizing Antibody Discovery: An Innovative AI Model for Generating Robust Libraries 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 910-912
作者:  Wang, Yaojun;  Sun, Shiwei
收藏  |  浏览/下载：0/0  |  提交时间：2024/05/20
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 卷号: 20, 期号: 3, 页码: 446-454
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载：11/0  |  提交时间：2023/07/12
MicroRNA  Cancer  Differential expression  Model organism  Database  
pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文
JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9
作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao
收藏  |  浏览/下载：28/0  |  提交时间：2022/06/21
Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning  
Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 卷号: 19, 期号: 3, 页码: 377-393
作者:  Luo, Haitao;  Bu, Dechao;  Shao, Lijuan;  Li, Yang;  Sun, Liang;  Wang, Ce;  Wang, Jing;  Yang, Wei;  Yang, Xiaofei;  Dong, Jun;  Zhao, Yi;  Li, Furong
收藏  |  浏览/下载：19/0  |  提交时间：2022/12/07
Long non-coding RNA  Transcriptome assembly  Metacell  Immune regulation  Functional annotation  
Deep Learning in Proteomics 期刊论文
PROTEOMICS, 2020, 页码: 21
作者:  Wen, Bo;  Zeng, Wen-Feng;  Liao, Yuxing;  Shi, Zhiao;  Savage, Sara R.;  Jiang, Wen;  Zhang, Bing
收藏  |  浏览/下载：28/0  |  提交时间：2021/12/01
bioinformatics  deep learning  proteomics  
GameTag: A New Sequence Tag Generation Algorithm Based on Cooperative Game Theory 期刊论文
PROTEOMICS, 2020, 页码: 9
作者:  Fei, Zhengcong;  Wang, Kaifei;  Chi, Hao
收藏  |  浏览/下载：49/0  |  提交时间：2020/12/10
cooperative game  deep learning  proteomics  sequence tag generation  
A Deep Learning-Based Tumor Classifier Directly Using MS Raw Data 期刊论文
PROTEOMICS, 2020, 页码: 7
作者:  Dong, Hao;  Liu, Yi;  Zeng, Wen-Feng;  Shu, Kunxian;  Zhu, Yunping;  Chang, Cheng
收藏  |  浏览/下载：57/0  |  提交时间：2020/12/10
deep learning  MS data  proteomics  tumor classifier  
Identification of glycan branching patterns using multistage mass spectrometry with spectra tree analysis 期刊论文
JOURNAL OF PROTEOMICS, 2020, 卷号: 217, 页码: 7
作者:  Wang, Hui;  Zhang, Jingwei;  Dong, Junchuan;  Hou, Meijie;  Pan, Weiyi;  Bu, Dongbo;  Zhou, Jinyu;  Zhang, Qi;  Wang, Yaojun;  Zhao, Keli;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：55/0  |  提交时间：2020/12/10
Multi-stage mass spectrometry  Glycan branching pattern  Glycan identification  Spectra tree  Isomeric glycan  
NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2020, 卷号: 19, 期号: 1, 页码: 11-30
作者:  De Leoz, Maria Lorna A.;  Duewer, David L.;  Fung, Adam;  Liu, Lily;  Yau, Hoi Kei;  Potter, Oscar;  Staples, Gregory O.;  Furuki, Kenichiro;  Frenkel, Ruth;  Hu, Yunli;  Sosic, Zoran;  Zhang, Peiqing;  Altmann, Friedrich;  Grunwald-Grube, Clemens;  Shao, Chun;  Zaia, Joseph;  Evers, Waltraud;  Pengelley, Stuart;  Suckau, Detlev;  Wiechmann, Anja;  Resemann, Anja;  Jabs, Wolfgang;  Beck, Alain;  Froehlich, John W.;  Huang, Chuncui;  Li, Yan;  Liu, Yaming;  Sun, Shiwei;  Wang, Yaojun;  Seo, Youngsuk;  An, Hyun Joo;  Reichardt, Niels-Christian;  Ruiz, Juan Echevarria;  Archer-Hartmann, Stephanie;  Azadi, Parastoo;  Bell, Len;  Lakos, Zsuzsanna;  An, Yanming;  Cipollo, John F.;  Pucic-Bakovic, Maja;  Stambuk, Jerko;  Lauc, Gordan;  Li, Xu;  Wang, Peng George;  Bock, Andreas;  Hennig, Rene;  Rapp, Erdmann;  Creskey, Marybeth;  Cyr, Terry D.;  Nakano, Miyako;  Sugiyama, Taiki;  Leung, Pui-King Amy;  Link-Lenczowski, Pawe;  Jaworek, Jolanta;  Yang, Shuang;  Zhang, Hui;  Kelly, Tim;  Klapoetke, Song;  Cao, Rui;  Kim, Jin Young;  Lee, Hyun Kyoung;  Lee, Ju Yeon;  Yoo, Jong Shin;  Kim, Sa-Rang;  Suh, Soo-Kyung;  de Haan, Noortje;  Falck, David;  Lageveen-Kammeijer, Guinevere S. M.;  Wuhrer, Manfred;  Emery, Robert J.;  Kozak, Radoslaw P.;  Liew, Li Phing;  Royle, Louise;  Urbanowicz, Paulina A.;  Packer, Nicolle H.;  Song, Xiaomin;  Everest-Dass, Arun;  Lattova, Erika;  Cajic, Samanta;  Alagesan, Kathirvel;  Kolarich, Daniel;  Kasali, Toyin;  Lindo, Viv;  Chen, Yuetian;  Goswami, Kudrat;  Gau, Brian;  Amunugama, Ravi;  Jones, Richard;  Stroop, Corn J. M.;  Kato, Koichi;  Yagi, Hirokazu;  Kondo, Sachiko;  Yuen, C. T.;  Harazono, Akira;  Shi, Xiaofeng;  Magnelli, Paula E.;  Kasper, Brian T.;  Mahal, Lara;  Harvey, David J.;  O'Flaherty, Roisin;  Rudd, Pauline M.;  Saldova, Radka;  Hecht, Elizabeth S.;  Muddiman, David C.;  Kang, Jichao;  Bhoskar, Prachi;  Menard, Daniele;  Saati, Andrew;  Merle, Christine;  Mast, Steven;  Tep, Sam;  Truong, Jennie;  Nishikaze, Takashi;  Sekiya, Sadanori;  Shafer, Aaron;  Funaoka, Sohei;  Toyoda, Masaaki;  de Vreugd, Peter;  Caron, Cassie;  Pradhan, Pralima;  Tan, Niclas Chiang;  Mechref, Yehia;  Patil, Sachin;  Rohrer, Jeffrey S.;  Chakrabarti, Ranjan;  Dadke, Disha;  Lahori, Mohammedazam;  Zou, Chunxia;  Cairo, Christopher;  Reiz, Bela;  Whittal, Randy M.;  Lebrilla, Carlito B.;  Wu, Lauren;  Guttman, Andras;  Szigeti, Marton;  Kremkow, Benjamin G.;  Lee, Kelvin H.;  Sihlbom, Carina;  Adamczyk, Barbara;  Jin, Chunsheng;  Karlsson, Niclas G.;  Ornros, Jessica;  Larson, Gran;  Nilsson, Jonas;  Meyer, Bernd;  Wiegandt, Alena;  Komatsu, Emy;  Perreault, Helene;  Bodnar, Edward D.;  Said, Nassur;  Francois, Yannis-Nicolas;  Leize-Wagner, Emmanuelle;  Maier, Sandra;  Zeck, Anne;  Heck, Albert J. R.;  Yang, Yang;  Haselberg, Rob;  Yu, Ying Qing;  Alley, William;  Leone, Joseph W.;  Yuan, Hua;  Stein, Stephen E.
收藏  |  浏览/下载：77/0  |  提交时间：2020/12/10
Glycomics  mass spectrometry  fluorescence  glycosylation  glycoproteins  glycan  glycopeptide  interlaboratory study  NISTmAb  reference antibody