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Many-core acceleration of the first-principles all-electron quantum perturbation calculations 期刊论文
COMPUTER PHYSICS COMMUNICATIONS, 2021, 卷号: 267, 页码: 8
作者:  Shang, Honghui;  Duan, Xiaohui;  Li, Fang;  Zhang, Libo;  Xu, Zhiqian;  Liu, Kan;  Luo, Haiwen;  Ji, Yingrui;  Zhao, Wenxuan;  Xue, Wei;  Chen, Li;  Zhang, Yunquan
收藏  |  浏览/下载：36/0  |  提交时间：2021/12/01
Density-functional perturbation theory  Many-core architecture  Linear scaling  MPI  Numeric atomic orbitals  
Improve the Resolution and Parallel Performance of the Three-Dimensional Refine Algorithm in RELION Using CUDA and MPI 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2021, 卷号: 18, 期号: 2, 页码: 583-595
作者:  Zhang, Jingrong;  Wang, Zihao;  Liu, Zhiyong;  Zhang, Fa
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Memory management  Graphics processing units  Arrays  Statistical analysis  Three-dimensional displays  cryoEM  RELION  CUDA  statistical method  Top-k selection  
Efficient parallel linear scaling method to get the response density matrix in all-electron real-space density-functional perturbation theory 期刊论文
COMPUTER PHYSICS COMMUNICATIONS, 2021, 卷号: 258, 页码: 11
作者:  Shang, Honghui;  Liang, WanZhen;  Zhang, Yunquan;  Yang, Jinlong
收藏  |  浏览/下载：34/0  |  提交时间：2021/12/01
Density-functional perturbation theory  Linear scaling  MPI  Numeric atomic orbitals  Density-function theory  
The dynamic parallel distribution algorithm for hybrid density-functional calculations in HONPAS package 期刊论文
COMPUTER PHYSICS COMMUNICATIONS, 2020, 卷号: 254, 页码: 9
作者:  Shang, Honghui;  Xu, Lei;  Wu, Baodong;  Qin, Xinming;  Zhang, Yunquan;  Yang, Jinlong
收藏  |  浏览/下载：50/0  |  提交时间：2020/12/10
Density-functional theory  Hartree-Fock  Hybrid functionals  Numeric atomic orbitals  Linear scaling  MPI  
Numerical optimization algorithm for unsteady flows of rotor based on web service 期刊论文
INTELLIGENT AUTOMATION AND SOFT COMPUTING, 2019, 卷号: 25, 期号: 3, 页码: 527-546
作者:  Zhang, Jilin;  Liu, Xuechao;  Wan, Jian;  Ren, Yongjian;  Xu, Binglin;  He, Jianfan;  Fan, Yuchen;  Zhou, Li;  Wei, Zhenguo;  Zhang, Juncong;  Wang, Jue
收藏  |  浏览/下载：475/0  |  提交时间：2019/12/10
Service-oriented  LU-SGS  MPI  METIS  Load Balancing  
Fine-grained alignment of cryo-electron subtomograms based on MPI parallel optimization 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 13
作者:  Lu, Yongchun;  Zeng, Xiangrui;  Zhao, Xiaofang;  Li, Shirui;  Li, Hua;  Gao, Xin;  Xu, Min
收藏  |  浏览/下载：76/0  |  提交时间：2019/12/10
Stochastic average gradient  Fine-grained alignment  Cryo-ET  MPI  
Context-adaptive matching for optical flow 期刊论文
MULTIMEDIA TOOLS AND APPLICATIONS, 2019, 卷号: 78, 期号: 1, 页码: 641-659
作者:  Zu, Yueran;  Tang, Wenzhong;  Bao, Xiuguo;  Wang, Yanyang;  Gao, Ke
收藏  |  浏览/下载：75/0  |  提交时间：2019/04/03
Optical flow  PatchMatch  Edge preserving  Large displacement  
Cache-Oblivious MPI All-to-All Communications Based on Morton Order 期刊论文
IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, 2018, 卷号: 29, 期号: 3, 页码: 542-555
作者:  Li, Shigang;  Zhang, Yunquan;  Hoefler, Torsten
收藏  |  浏览/下载：50/0  |  提交时间：2019/12/10
cache-oblivious algorithms  collective communication  NUMA  MPI_Alltoall  MPI_Allgather  neighborhood collectives  
Study of parallel programming models on computer clusters with Intel MIC coprocessors 期刊论文
INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS, 2017, 卷号: 31, 期号: 4, 页码: 303-315
作者:  Huang, Miaoqing;  Lai, Chenggang;  Shi, Xuan;  Hao, Zhijun;  You, Haihang
收藏  |  浏览/下载：42/0  |  提交时间：2019/12/12
parallel programming model  Intel MIC processor  MPI  OpenMP  performance evaluation  
SuperDragon: A Heterogeneous Parallel System for Accelerating 3D Reconstruction of Cryo-Electron Microscopy Images 期刊论文
ACM TRANSACTIONS ON RECONFIGURABLE TECHNOLOGY AND SYSTEMS, 2015, 卷号: 8, 期号: 4, 页码: 22
作者:  Tan, Guangming;  Zhang, Chunming;  Wang, Wendi;  Zhang, Peiheng
收藏  |  浏览/下载：44/0  |  提交时间：2019/12/13
Design  Performance  Cryo-EM  3D reconstruction  heterogeneous  FPGA