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VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms 期刊论文
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2022, 卷号: 221, 页码: 14
作者:  Hao, Yu;  Wan, Xiaohua;  Yan, Rui;  Liu, Zhiyong;  Li, Jintao;  Zhang, Shihua;  Cui, Xuefeng;  Zhang, Fa
收藏  |  浏览/下载:13/0  |  提交时间:2023/07/12
Cryo-ET  Sub-tomogram averaging  Particle localization  Particle classification  Convolutional neural networks  
PIXER: an automated particle-selection method based on segmentation using a deep neural network 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 14
作者:  Zhang, Jingrong;  Wang, Zihao;  Chen, Yu;  Han, Renmin;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:75/0  |  提交时间:2019/04/03
Cryo-electron microscope  Single-particle analysis  Deep learning  Particle selection  Segmentation  
AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 2, 页码: 319-328
作者:  Han, Renmin;  Wan, Xiaohua;  Li, Lun;  Lawrence, Albert;  Yang, Peng;  Li, Yu;  Wang, Sheng;  Sun, Fei;  Liu, Zhiyong;  Gao, Xin;  Zhang, Fa
收藏  |  浏览/下载:73/0  |  提交时间:2019/04/03
ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2017, 页码: 12
作者:  Wang, Zihao;  Chen, Yu;  Zhang, Jingrong;  Li, Lun;  Wan, Xiaohua;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:60/0  |  提交时间:2019/12/10
electron tomography  hybrid task allocation strategy  ICON  MIC acceleration  parallel NUFFT  Tianhe-2 supercomputer  
Computer-Aided Detection of Pulmonary Nodules in Computed Tomography Images: Effect on Observer Performance 期刊论文
JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS, 2017, 卷号: 7, 期号: 6, 页码: 1205-1211
作者:  Liu, JiaBao;  Wang, Yu;  Zhang, Fa;  Ren, Fei;  Liu, LiHeng;  He, Wen
收藏  |  浏览/下载:73/0  |  提交时间:2019/12/12
Computer-Aided Detection  Model Learning  Lung Nodule  Computed Tomography  
AuTom: A novel automatic platform for electron tomography reconstruction 期刊论文
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 卷号: 199, 期号: 3, 页码: 196-208
作者:  Han, Renmin;  Wan, Xiaohua;  Wang, Zihao;  Hao, Yu;  Zhang, Jingrong;  Chen, Yu;  Gao, Xin;  Liu, Zhiyong;  Ren, Fei;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:52/0  |  提交时间:2019/12/12
Electron tomography  Alignment  Reconstruction  Image processing workflow  
A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 卷号: 14, 期号: 2, 页码: 316-325
作者:  Zhang, Fa;  Chen, Yu;  Ren, Fei;  Wang, Xuan;  Liu, Zhiyong;  Wan, Xiaohua
收藏  |  浏览/下载:57/0  |  提交时间:2019/12/12
Particle selection  feature-based  template-matching  rotation-invariant feature  correlation score functions