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PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 卷号: 21, 期号: 3, 页码: 480-491
作者:  Ma, Ke;  Li, Jiawei;  Zhao, Mengyuan;  Zamit, Ibrahim;  Lin, Bin;  Guo, Fei;  Tang, Jijun
收藏  |  浏览/下载：10/0  |  提交时间：2024/12/06
DNA  Proteins  Organisms  Biology  Proteomics  Gene expression  Feature extraction  Transcription factor  TF-target gene interactions  DNA sequence  graph neural network  personalized PageRank  
Identification of circRNA biomarker for gastric cancer through integrated analysis (vol 9, 857320, 2022) 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Histopathological bladder cancer gene mutation prediction with hierarchical deep multiple-instance learning 期刊论文
MEDICAL IMAGE ANALYSIS, 2023, 卷号: 87, 页码: 13
作者:  Yan, Rui;  Shen, Yijun;  Zhang, Xueyuan;  Xu, Peihang;  Wang, Jun;  Li, Jintao;  Ren, Fei;  Ye, Dingwei;  Zhou, S. Kevin
收藏  |  浏览/下载：34/0  |  提交时间：2023/12/04
Bladder cancer  Contrastive learning  Gene mutation prediction  Histopathological image analysis  Multiple instance learning  
Au-Fe3O4 nanozyme coupled with CRISPR-Cas12a for sensitive and visual antibiotic resistance diagnosing 期刊论文
ANALYTICA CHIMICA ACTA, 2023, 卷号: 1251, 页码: 10
作者:  Chen, Haoxiang;  Li, Bangying;  Shi, Shangyi;  Zhou, Tao;  Wang, Xiumin;  Wang, Zuyong;  Zhou, Xi;  Wang, Miao;  Shi, Wei;  Ren, Lei
收藏  |  浏览/下载：21/0  |  提交时间：2023/12/04
CRISPR  Cas12a  Colorimetric assay  Antibiotic resistance bacteria  Antibiotic resistance gene  Nanozyme  Pathogen detection  
Disclosing Potential Key Genes, Therapeutic Targets and Agents for Non-Small Cell Lung Cancer: Evidence from Integrative Bioinformatics Analysis 期刊论文
VACCINES, 2022, 卷号: 10, 期号: 5, 页码: 20
作者:  Mosharaf, Md Parvez;  Reza, Md Selim;  Gov, Esra;  Mahumud, Rashidul Alam;  Mollah, Md Nurul Haque
收藏  |  浏览/下载：36/0  |  提交时间：2022/12/07
non-small cell lung cancer  gene expression profiles  molecular signatures  therapeutic targets and agents  integrated bioinformatics approaches  
Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 13
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：40/0  |  提交时间：2022/12/07
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Rejuvenation remadels transcriptional network to improve rhizogenesis in mature Juglans tree 期刊论文
TREE PHYSIOLOGY, 2021, 卷号: 41, 期号: 10, 页码: 1938-1952
作者:  Song, Xiaobo;  Liu, Hao;  Bu, Dechao;  Xu, Huzhi;  Ma, Qingguo;  Pei, Dong
收藏  |  浏览/下载：44/0  |  提交时间：2022/06/21
adventitious root  BGL12  gene regulatory network  Juglans  rejuvenation  
Gene Panel流程的并行设计与优化研究 期刊论文
计算机学报, 2019, 卷号: 42.0, 期号: 011, 页码: 2429
作者:  王元戎;  曾平;  臧大伟;  谭光明;  孙凝晖
收藏  |  浏览/下载：24/0  |  提交时间：2023/12/04
大数据  Gene  Panel  并行优化  负载均衡  底层库优化  
Identification and function annotation of long intervening noncoding RNAs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2017, 卷号: 18, 期号: 5, 页码: 789-797
作者:  Luo, Haitao;  Bu, Dechao;  Sun, Liang;  Fang, Shuangsang;  Liu, Zhiyong;  Zhao, Yi
收藏  |  浏览/下载：81/0  |  提交时间：2019/12/12
transcriptom sequencing  noncoding RNAs  gene identification  function annotation  network analysis  computational method  
Assessing TF regulatory relationships of divergently transcribed genes 期刊论文
GENOMICS, 2008, 卷号: 92, 期号: 5, 页码: 316-321
作者:  Chen, Lan;  Cai, Lun;  Skogerbo, Geir;  Zhao, Yi;  Chen, Runsheng
收藏  |  浏览/下载：53/0  |  提交时间：2019/12/16
Divergently transcribed genes  Gene regulation  ChIP-chip data  Microarray data