中国科学院计算技术研究所机构知识库

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	CellPolaris: Transfer Learning for Gene Regulatory Network Construction to Guide Cell State Transitions 期刊论文 ADVANCED SCIENCE, 2026, 页码: 18 作者:  Feng, Guihai;  Qin, Xin;  Zhang, Jiahao;  Huang, Wuliang;  Zhang, Yiyang;  Cui, Wentao;  Chen, Yao;  Li, Shirui;  Liu, Wenhao;  Tian, Yao;  Liu, Yana;  Dong, Jingxi;  Xu, Ping;  Man, Zhenpeng;  Liu, Guole;  Liang, Zhongming;  Jiang, Xinlong;  Yang, Xiaodong;  Wang, Pengfei;  Yang, Ge;  Wang, Hongmei;  Wang, Xuezhi;  Tong, Ming-Han;  Zhou, Yuanchun;  Zhang, Shihua;  Chen, Yiqiang;  Wang, Yong;  Li, Xin 收藏  |  浏览/下载：1/0  |  提交时间：2026/05/25 cell fate  gene regulatory network  perturbation simulation  transfer learning
	Pathway-Aware Multimodal Transformer (PAMT): Integrating Pathological Image and Gene Expression for Interpretable Cancer Survival Analysis 期刊论文 IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2026, 卷号: 48, 期号: 1, 页码: 896-913 作者:  Yan, Rui;  Zhang, Xueyuan;  Jiang, Zihang;  Wang, Baizhi;  Bian, Xiuwu;  Ren, Fei;  Zhou, S. Kevin 收藏  |  浏览/下载：1/0  |  提交时间：2026/05/25 Pathology  Cancer  Transformers  Feature extraction  Data models  Biological system modeling  Analytical models  Deep learning  Semantics  Multimodal transformer  model interpretability  survival analysis  pathological image analysis  gene expression  gene expression
	High-accuracy prediction of mutations in nine genes in lung adenocarcinoma via two-stage multi-instance learning on large-scale whole-slide images 期刊论文 DIAGNOSTIC PATHOLOGY, 2025, 卷号: 20, 期号: 1, 页码: 14 作者:  Zhao, Lingyu;  Zhao, Na;  Zhong, Ruiqi;  Niu, Yiru;  Chang, Ziyi;  Su, Peng;  Wang, Zhihui;  Cui, Lifang;  Wang, Bei;  Chen, Huang;  Wang, Xiaowen;  Kong, Xiangbing;  Du, Baolin;  Ren, Fei;  Zhong, Dingrong 收藏  |  浏览/下载：23/0  |  提交时间：2025/12/03 Artificial intelligence  Lung adenocarcinoma  Gene mutation  Multiple instance learning  Self-supervised
	PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection 期刊论文 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 卷号: 21, 期号: 3, 页码: 480-491 作者:  Ma, Ke;  Li, Jiawei;  Zhao, Mengyuan;  Zamit, Ibrahim;  Lin, Bin;  Guo, Fei;  Tang, Jijun 收藏  |  浏览/下载：57/0  |  提交时间：2024/12/06 DNA  Proteins  Organisms  Biology  Proteomics  Gene expression  Feature extraction  Transcription factor  TF-target gene interactions  DNA sequence  graph neural network  personalized PageRank
	Identification of circRNA biomarker for gastric cancer through integrated analysis (vol 9, 857320, 2022) 期刊论文 FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2 作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin 收藏  |  浏览/下载：64/0  |  提交时间：2023/12/04 gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction
	Histopathological bladder cancer gene mutation prediction with hierarchical deep multiple-instance learning 期刊论文 MEDICAL IMAGE ANALYSIS, 2023, 卷号: 87, 页码: 13 作者:  Yan, Rui;  Shen, Yijun;  Zhang, Xueyuan;  Xu, Peihang;  Wang, Jun;  Li, Jintao;  Ren, Fei;  Ye, Dingwei;  Zhou, S. Kevin 收藏  |  浏览/下载：81/0  |  提交时间：2023/12/04 Bladder cancer  Contrastive learning  Gene mutation prediction  Histopathological image analysis  Multiple instance learning
	Au-Fe3O4 nanozyme coupled with CRISPR-Cas12a for sensitive and visual antibiotic resistance diagnosing 期刊论文 ANALYTICA CHIMICA ACTA, 2023, 卷号: 1251, 页码: 10 作者:  Chen, Haoxiang;  Li, Bangying;  Shi, Shangyi;  Zhou, Tao;  Wang, Xiumin;  Wang, Zuyong;  Zhou, Xi;  Wang, Miao;  Shi, Wei;  Ren, Lei 收藏  |  浏览/下载：67/0  |  提交时间：2023/12/04 CRISPR  Cas12a  Colorimetric assay  Antibiotic resistance bacteria  Antibiotic resistance gene  Nanozyme  Pathogen detection
	Disclosing Potential Key Genes, Therapeutic Targets and Agents for Non-Small Cell Lung Cancer: Evidence from Integrative Bioinformatics Analysis 期刊论文 VACCINES, 2022, 卷号: 10, 期号: 5, 页码: 20 作者:  Mosharaf, Md Parvez;  Reza, Md Selim;  Gov, Esra;  Mahumud, Rashidul Alam;  Mollah, Md Nurul Haque 收藏  |  浏览/下载：76/0  |  提交时间：2022/12/07 non-small cell lung cancer  gene expression profiles  molecular signatures  therapeutic targets and agents  integrated bioinformatics approaches
	Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis 期刊论文 FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 13 作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin 收藏  |  浏览/下载：81/0  |  提交时间：2022/12/07 gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction
	Rejuvenation remadels transcriptional network to improve rhizogenesis in mature Juglans tree 期刊论文 TREE PHYSIOLOGY, 2021, 卷号: 41, 期号: 10, 页码: 1938-1952 作者:  Song, Xiaobo;  Liu, Hao;  Bu, Dechao;  Xu, Huzhi;  Ma, Qingguo;  Pei, Dong 收藏  |  浏览/下载：89/0  |  提交时间：2022/06/21 adventitious root  BGL12  gene regulatory network  Juglans  rejuvenation