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Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2024, 页码: 13
作者:  Niyogisubizo, Jovial;  Zhao, Keliang;  Meng, Jintao;  Pan, Yi;  Didi, Rosiy Adi;  Wei, Yanjie
收藏  |  浏览/下载:2/0  |  提交时间:2024/12/06
cell segmentation  deep learning  watershed segmentation  bright-field microscopy  iPS cell reprogramming  attention mechanism  
Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2024, 页码: 12
作者:  Yang, Zhidong;  Li, Hongjia;  Zang, Dawei;  Han, Renmin;  Zhang, Fa
收藏  |  浏览/下载:1/0  |  提交时间:2024/12/06
cryo-EM  image denoising  noise simulation and deep learning  
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo
收藏  |  浏览/下载:26/0  |  提交时间:2022/12/07
deep learning and protein threading  protein alignment  protein structure prediction  
SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2021, 页码: 15
作者:  Gu, Wenyan;  Zhou, Aizhong;  Wang, Lusheng;  Sun, Shiwei;  Cui, Xuefeng;  Zhu, Daming
收藏  |  浏览/下载:47/0  |  提交时间:2021/12/01
genome structural variant  genome structural variant detection  long-read sequencing and single-molecule sequencing  third-generation sequencing  
A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2019, 页码: 11
作者:  Wang, Zihao;  Zhang, Jingrong;  Gao, Weifang;  Liu, Zhiyong;  Wan, Xiaohua;  Zhang, Fa
收藏  |  浏览/下载:51/0  |  提交时间:2020/12/10
consensus optimization  cryoelectron tomography  multiple-tilt reconstruction  parallel computing  TxBR  
ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2017, 页码: 12
作者:  Wang, Zihao;  Chen, Yu;  Zhang, Jingrong;  Li, Lun;  Wan, Xiaohua;  Liu, Zhiyong;  Sun, Fei;  Zhang, Fa
收藏  |  浏览/下载:67/0  |  提交时间:2019/12/10
electron tomography  hybrid task allocation strategy  ICON  MIC acceleration  parallel NUFFT  Tianhe-2 supercomputer