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Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:53/0  |  提交时间:2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization  
Predicting human contacts through alternating direction method of multipliers 期刊论文
INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 2019, 卷号: 30, 期号: 7, 页码: 18
作者:  Huang, Chunlin;  Bu, Dongbo
收藏  |  浏览/下载:78/0  |  提交时间:2019/12/10
Human contact prediction  alternating direction method of multipliers  periodicity  
Toward Automated Identification of Glycan Branching Patterns Using Multistage Mass Spectrometry with Intelligent Precursor Selection 期刊论文
ANALYTICAL CHEMISTRY, 2018, 卷号: 90, 期号: 24, 页码: 14412-14422
作者:  Sun, Shiwei;  Huang, Chuncui;  Wang, Yaojun;  Liu, Yaming;  Zhang, Jingwei;  Zhou, Jinyu;  Gao, Feng;  Yang, Fei;  Chen, Runsheng;  Mulloy, Barbara;  Chai, Wengang;  Li, Yan;  Bu, Dongbo
收藏  |  浏览/下载:261/0  |  提交时间:2019/04/03
TagDict: Prediction of Theoretical Spectra of Peptides Based on A Tag Dictionary 期刊论文
CURRENT BIOINFORMATICS, 2018, 卷号: 13, 期号: 5, 页码: 444-449
作者:  Wang, Yaojun;  Zhang, Jingwei;  Bu, Dongbo;  Sun, Shiwei
收藏  |  浏览/下载:73/0  |  提交时间:2019/12/10
Mass spectrometry  theoretical spectrum prediction  database search  peptide identification  TagDict  MassAnalyzer  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:  Zhu, Jianwei;  Zhang, Haicang;  Li, Shuai Cheng;  Wang, Chao;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:63/0  |  提交时间:2019/12/10
Survey on Algorithms for Tandem Mass Spectrometry Oligosaccharide Identification 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2017, 卷号: 44, 期号: 10, 页码: 830-847
作者:  Wang Yao-Jun;  Huang Chun-Cui;  Gao Feng;  Zhang Jing-Wei;  Li Yan;  Bu Dong-Bo;  Sun Shi-Wei
收藏  |  浏览/下载:74/0  |  提交时间:2019/12/12
mass spectrometry  oligosaccharide  algorithm  oligosaccharide identification  
Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 11
作者:  Gong, Hai'e;  Zhang, Haicang;  Zhu, Jianwei;  Wang, Chao;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:64/0  |  提交时间:2019/12/12
Protein structure  Burial states of residue  Conditional random field  Residue correlation  
Insights into the transmission of respiratory infectious diseases through empirical human contact networks 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 11
作者:  Huang, Chunlin;  Liu, Xingwu;  Sun, Shiwei;  Li, Shuai Cheng;  Deng, Minghua;  He, Guangxue;  Zhang, Haicang;  Wang, Chao;  Zhou, Yang;  Zhao, Yanlin;  Bu, Dongbo
收藏  |  浏览/下载:74/0  |  提交时间:2019/12/13