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Microbiome Resilience and Health Implications for People in Half-Year Travel 期刊论文
FRONTIERS IN IMMUNOLOGY, 2022, 卷号: 13, 页码: 15
作者:  Cheng, Mingyue;  Liu, Hong;  Han, Maozhen;  Li, Shuai Cheng;  Bu, Dongbo;  Sun, Shiwei;  Hu, Zhiqiang;  Yang, Pengshuo;  Wang, Rui;  Liu, Yawen;  Chen, Feng;  Peng, Jianjun;  Peng, Hong;  Song, Hongxing;  Xia, Yang;  Chu, Liqun;  Zhou, Quan;  Guan, Feng;  Wu, Jing;  Tan, Guangming;  Ning, Kang
收藏  |  浏览/下载：37/0  |  提交时间：2022/12/07
travel  enterotype  microbiome  bi-directional plasticity  resilience  dietary shift  immunity  health  
HepParser: An Intelligent Software Program for Deciphering Low-Molecular-Weight Heparin Based on Mass Spectrometry 期刊论文
FRONTIERS IN CHEMISTRY, 2021, 卷号: 9, 页码: 13
作者:  Wang, Hui;  Wang, Yu;  Hou, Meijie;  Zhang, Chunming;  Wang, Yaojun;  Guo, Zhendong;  Bu, Dongbo;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：45/0  |  提交时间：2021/12/01
LMWHs  mass spectrometry  glycosaminoglycans  isotopic distribution  computational method  
CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文
NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9
作者:  Ju, Fusong;  Zhu, Jianwei;  Shao, Bin;  Kong, Lupeng;  Liu, Tie-Yan;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：42/0  |  提交时间：2021/12/01
ISSEC: inferring contacts among protein secondary structure elements using deep object detection 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:  Zhang, Qi;  Zhu, Jianwei;  Ju, Fusong;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Protein structure  Secondary structure elements  Inter-SSE contacts  
Identification of glycan branching patterns using multistage mass spectrometry with spectra tree analysis 期刊论文
JOURNAL OF PROTEOMICS, 2020, 卷号: 217, 页码: 7
作者:  Wang, Hui;  Zhang, Jingwei;  Dong, Junchuan;  Hou, Meijie;  Pan, Weiyi;  Bu, Dongbo;  Zhou, Jinyu;  Zhang, Qi;  Wang, Yaojun;  Zhao, Keli;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：68/0  |  提交时间：2020/12/10
Multi-stage mass spectrometry  Glycan branching pattern  Glycan identification  Spectra tree  Isomeric glycan  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：53/0  |  提交时间：2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization  
Best-first search guided multistage mass spectrometry-based glycan identification 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 17, 页码: 2991-2997
作者:  Wang, Yaojun;  Bu, Dongbo;  Huang, Chuncui;  Wang, Hui;  Zhou, Jinyu;  Dong, Junchuan;  Pan, Weiyi;  Zhang, Jingwei;  Zhang, Qi;  Li, Yan;  Sun, Shiwei
收藏  |  浏览/下载：92/0  |  提交时间：2019/12/10
DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I284-I294
作者:  Chen, Hao;  Shaw, Dipan;  Zeng, Jianyang;  Bu, Dongbo;  Jiang, Tao
收藏  |  浏览/下载：87/0  |  提交时间：2019/12/10
Predicting human contacts through alternating direction method of multipliers 期刊论文
INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 2019, 卷号: 30, 期号: 7, 页码: 18
作者:  Huang, Chunlin;  Bu, Dongbo
收藏  |  浏览/下载：78/0  |  提交时间：2019/12/10
Human contact prediction  alternating direction method of multipliers  periodicity  
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10
作者:  Wang, Chao;  Wei, Yi;  Zhang, Haicang;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：90/0  |  提交时间：2019/08/16
Protein structure prediction  Energy function  Attraction-basin  Reverse Monte Carlo sampling  Monte Carlo search  Linear program