中国科学院计算技术研究所机构知识库

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	Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文 GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925 作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：10/0  |  提交时间：2024/05/20 Protein folding  Protein structure prediction  Deep learning  Transformer  Language model
	Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文 BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996 作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：27/0  |  提交时间：2022/12/07
	ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文 JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo 收藏  |  浏览/下载：26/0  |  提交时间：2022/12/07 deep learning and protein threading  protein alignment  protein structure prediction
	CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文 NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9 作者:  Ju, Fusong;  Zhu, Jianwei;  Shao, Bin;  Kong, Lupeng;  Liu, Tie-Yan;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：42/0  |  提交时间：2021/12/01
	ISSEC: inferring contacts among protein secondary structure elements using deep object detection 期刊论文 BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13 作者:  Zhang, Qi;  Zhu, Jianwei;  Ju, Fusong;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01 Protein structure  Secondary structure elements  Inter-SSE contacts
	Predicting protein inter-residue contacts using composite likelihood maximization and deep learning (vol 20, 537, 2019) 期刊论文 BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 5 作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：51/0  |  提交时间：2020/12/10
	Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文 BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11 作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：53/0  |  提交时间：2020/12/10 Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization
	Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文 BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10 作者:  Wang, Chao;  Wei, Yi;  Zhang, Haicang;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：90/0  |  提交时间：2019/08/16 Protein structure prediction  Energy function  Attraction-basin  Reverse Monte Carlo sampling  Monte Carlo search  Linear program
	蛋白质三级结构预测算法综述 期刊论文 计算机学报, 2018, 卷号: 41.0, 期号: 004, 页码: 760 作者:  王超;  朱建伟;  张海仓;  巩海娥;  郑伟谋;  卜东波 收藏  |  浏览/下载：14/0  |  提交时间：2023/12/04 蛋白质结构  同源建模  归范法  从头预测法  能量函数  动态规划  线性规划
	Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文 BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757 作者:  Zhu, Jianwei;  Zhang, Haicang;  Li, Shuai Cheng;  Wang, Chao;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：63/0  |  提交时间：2019/12/10