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Validation Methods of Peptide Identification Results in Proteomics* 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou Wen-Jing;  Zeng Wen-Feng;  Chi Hao;  He Si-Min
收藏  |  浏览/下载：16/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
Validation Methods of Peptide Identification Results in Proteomics br 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：36/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
Confident software-driven identification of intact glycopeptides by integrating complementary peptide- and glycan-first search strategies in efficient mining of MS2 data 期刊论文
GLYCOBIOLOGY, 2021, 卷号: 31, 期号: 12, 页码: 1725-1726
作者:  Chien, Yu-Chun;  Kuo, Chu-Wei;  Zeng, Wen-Feng;  Khoo, Kay-Hooi
收藏  |  浏览/下载：31/0  |  提交时间：2022/12/07
Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3 期刊论文
NATURE METHODS, 2021, 页码: 15
作者:  Zeng, Wen-Feng;  Cao, Wei-Qian;  Liu, Ming-Qi;  He, Si-Min;  Yang, Peng-Yuan
收藏  |  浏览/下载：39/0  |  提交时间：2022/06/21
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582
作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：48/0  |  提交时间：2021/12/01
cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning  
pDeep3: Toward More Accurate Spectrum Prediction with Fast Few-Shot Learning 期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 14, 页码: 5815-5822
作者:  Tarn, Ching;  Zeng, Wen-Feng
收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01
Deep Learning in Proteomics 期刊论文
PROTEOMICS, 2020, 页码: 21
作者:  Wen, Bo;  Zeng, Wen-Feng;  Liao, Yuxing;  Shi, Zhiao;  Savage, Sara R.;  Jiang, Wen;  Zhang, Bing
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
bioinformatics  deep learning  proteomics  
A Deep Learning-Based Tumor Classifier Directly Using MS Raw Data 期刊论文
PROTEOMICS, 2020, 页码: 7
作者:  Dong, Hao;  Liu, Yi;  Zeng, Wen-Feng;  Shu, Kunxian;  Zhu, Yunping;  Chang, Cheng
收藏  |  浏览/下载：68/0  |  提交时间：2020/12/10
deep learning  MS data  proteomics  tumor classifier  
Study protocol for a parallel-group, double-blinded, randomized, controlled, noninferiority trial: the effect and safety of hybrid electroconvulsive therapy (Hybrid-ECT) compared with routine electroconvulsive therapy in patients with depression 期刊论文
BMC PSYCHIATRY, 2019, 卷号: 19, 期号: 1, 页码: 9
作者:  Rong, Han;  Xu, Shu-xian;  Zeng, Jing;  Yang, Ying-jia;  Zhao, Jie;  Lai, Wen-tao;  Chen, Li-chang;  Deng, Wen-feng;  Zhang, Xiangyang;  Zhang, Ying-li;  Li, Min-zhi;  Xiao, Li;  Xie, Xin-hui
收藏  |  浏览/下载：55/0  |  提交时间：2020/12/10
Study protocol  Randomized controlled trial  Hybrid electroconvulsive therapy  Electroconvulsive therapy  Depression  
MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731
作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min
收藏  |  浏览/下载：85/0  |  提交时间：2019/12/10