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Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 卷号: 19, 期号: 1, 页码: 209-219
作者:  Gao, Shan;  Han, Renmin;  Zeng, Xiangrui;  Liu, Zhiyong;  Xu, Min;  Zhang, Fa
收藏  |  浏览/下载:24/0  |  提交时间:2022/12/07
Cryo-electron tomography  image classification  convolution neural network  
SHREC 2020: Classification in cryo-electron tomograms 期刊论文
COMPUTERS & GRAPHICS-UK, 2020, 卷号: 91, 页码: 279-289
作者:  Gubins, Ilja;  Chaillet, Marten L.;  van der Schot, Gijs;  Veltkamp, Remco C.;  Forster, Friedrich;  Hao, Yu;  Wan, Xiaohua;  Cui, Xuefeng;  Zhang, Fa;  Moebel, Emmanuel;  Wang, Xiao;  Kihara, Daisuke;  Zeng, Xiangrui;  Xu, Min;  Nguyen, Nguyen P.;  White, Tommi;  Bunyak, Filiz
收藏  |  浏览/下载:66/0  |  提交时间:2020/12/10
Cryo-electron tomography  Computer vision  Pattern recognition  Protein classification  Benchmark  
Spark-based parallel calculation of 3D fourier shell correlation for macromolecule structure local resolution estimation 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 页码: 18
作者:  Lue, Yongchun;  Zeng, Xiangrui;  Tian, Xinhui;  Shi, Xiao;  Wang, Hui;  Zheng, Xiaohui;  Liu, Xiaodong;  Zhao, Xiaofang;  Gao, Xin;  Xu, Min
收藏  |  浏览/下载:62/0  |  提交时间:2020/12/10
3D local Fourier shell correlation  3D local resolution map  Key-value data  Spark  3D array partition  
Fine-grained alignment of cryo-electron subtomograms based on MPI parallel optimization 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 13
作者:  Lu, Yongchun;  Zeng, Xiangrui;  Zhao, Xiaofang;  Li, Shirui;  Li, Hua;  Gao, Xin;  Xu, Min
收藏  |  浏览/下载:83/0  |  提交时间:2019/12/10
Stochastic average gradient  Fine-grained alignment  Cryo-ET  MPI