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MAP3K13-232aa encoded by circMAP3K13 enhances cisplatin-induced pyroptosis by directly binding to IKKα in gastric adenocarcinoma 期刊论文
CELL DEATH & DISEASE, 2025, 卷号: 16, 期号: 1, 页码: 17
作者:  Du, Kaining;  Zhang, Xiaojing;  Qin, Ying;  Ma, Huizhen;  Bing, Chuhan;  Deng, Shiqi;  Chen, Yang;  Qin, Jiequan;  Chang, Shanshan;  Xiao, Siyu;  Peng, Lehua;  Xie, Xiaoya;  Feng, Xianling;  Fu, Xianli;  Wei, Yanjie;  Fan, Xinmin;  Ashktorab, Hassan;  Smoot, Duane;  Jin, Zhe;  Peng, Yin
收藏  |  浏览/下载：4/0  |  提交时间：2025/12/03
Utilizing machine learning-based QSAR model to overcome standalone consensus docking limitation in beta-lactamase inhibitors screening: a proof-of-concept study 期刊论文
BMC CHEMISTRY, 2024, 卷号: 18, 期号: 1, 页码: 16
作者:  Pitakbut, Thanet;  Munkert, Jennifer;  Xi, Wenhui;  Wei, Yanjie;  Fuhrmann, Gregor
收藏  |  浏览/下载：14/0  |  提交时间：2025/06/25
Molecular docking  Consensus docking  Random forest-based QSAR model  Beta-lactamase inhibitory screening  
ExomiRHub: A comprehensive database for hosting and analyzing human disease-related extracellular microRNA transcriptomics data 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 3104-3116
作者:  Liu, Yang;  Min, Zhuochao;  Mo, Jing;  Ju, Zhen;  Chen, Jianliang;  Liang, Weiling;  Zhang, Lantian;  Li, Hanguang;  Chan, Godfrey Chi-Fung;  Wei, Yanjie;  Zhang, Wenliang
收藏  |  浏览/下载：57/0  |  提交时间：2024/12/06
MiRNA  Extracellular vesicle  Exosome  Cancer  Liquid biopsy  
Artificial intelligence and computer-aided drug discovery: Methods development and application 期刊论文
METHODS, 2024, 卷号: 231, 页码: 55-56
作者:  Zhang, Haiping;  Wei, Yanjie;  Saravanan, Konda Mani
收藏  |  浏览/下载：27/0  |  提交时间：2024/12/06
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2024, 页码: 13
作者:  Niyogisubizo, Jovial;  Zhao, Keliang;  Meng, Jintao;  Pan, Yi;  Didi, Rosiy Adi;  Wei, Yanjie
收藏  |  浏览/下载：60/0  |  提交时间：2024/12/06
cell segmentation  deep learning  watershed segmentation  bright-field microscopy  iPS cell reprogramming  attention mechanism  
A new paradigm for applying deep learning to protein-ligand interaction prediction 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 25, 期号: 3, 页码: 12
作者:  Wang, Zechen;  Wang, Sheng;  Li, Yangyang;  Guo, Jingjing;  Wei, Yanjie;  Mu, Yuguang;  Zheng, Liangzhen;  Li, Weifeng
收藏  |  浏览/下载：32/0  |  提交时间：2024/12/06
protein-ligand interaction  scoring function  deep learning  graph neural network  
Design, in silico evaluation, and in vitro verification of new bivalent Smac mimetics with pro-apoptotic activity 期刊论文
METHODS, 2024, 卷号: 224, 页码: 35-46
作者:  Huang, Qingsheng;  Peng, Yin;  Peng, Yuefeng;  Lin, Huijuan;  Deng, Shiqi;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载：31/0  |  提交时间：2024/12/06
XIAP  Apoptosis  Antagonist  Smac mimetic  Caspase-3  Caspase-9  
A Weakly Supervised Learning Method for Cell Detection and Tracking Using Incomplete Initial Annotations 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 卷号: 24, 期号: 22, 页码: 28
作者:  Wu, Hao;  Niyogisubizo, Jovial;  Zhao, Keliang;  Meng, Jintao;  Xi, Wenhui;  Li, Hongchang;  Pan, Yi;  Wei, Yanjie
收藏  |  浏览/下载：64/0  |  提交时间：2024/05/20
cell detection  cell tracking  deep learning  weakly supervised learning  iPS cell reprogramming  brightfield microscopy  
JCcirc: circRNA full-length sequence assembly through integrated junction contigs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 6, 页码: 11
作者:  Zhang, Jingjing;  Zhang, Huiling;  Ju, Zhen;  Peng, Yin;  Pan, Yi;  Xi, Wenhui;  Wei, Yanjie
收藏  |  浏览/下载：47/0  |  提交时间：2024/05/20
circRNA  full-length sequence  transcriptome  junction contig  
Identification of Key Genes as Potential Drug Targets for Gastric Cancer 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2023, 卷号: 28, 期号: 4, 页码: 649-664
作者:  Hossain, Md. Tofazzal;  Reza, Md. Selim;  Peng, Yin;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载：61/0  |  提交时间：2023/07/12
gastric cancer  hub genes  candidate genes  molecular docking  candidate drugs