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SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：34/0  |  提交时间：2024/05/20
Deep learning  protein structure prediction  
Revolutionizing Antibody Discovery: An Innovative AI Model for Generating Robust Libraries 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 910-912
作者:  Wang, Yaojun;  Sun, Shiwei
收藏  |  浏览/下载：11/0  |  提交时间：2024/05/20
Predicting the antigenic evolution of SARS-COV-2 with deep learning 期刊论文
NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 14
作者:  Han, Wenkai;  Chen, Ningning;  Xu, Xinzhou;  Sahil, Adil;  Zhou, Juexiao;  Li, Zhongxiao;  Zhong, Huawen;  Gao, Elva;  Zhang, Ruochi;  Wang, Yu;  Sun, Shiwei;  Cheung, Peter Pak-Hang;  Gao, Xin
收藏  |  浏览/下载：19/0  |  提交时间：2023/12/04
A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics 期刊论文
NATURE COMMUNICATIONS, 2023, 卷号: 14, 期号: 1, 页码: 10
作者:  Li, Haoyang;  Zhou, Juexiao;  Li, Zhongxiao;  Chen, Siyuan;  Liao, Xingyu;  Zhang, Bin;  Zhang, Ruochi;  Wang, Yu;  Sun, Shiwei;  Gao, Xin
收藏  |  浏览/下载：18/0  |  提交时间：2023/12/04
GIPS-Mix for Accurate Identification of Isomeric Components in Glycan Mixtures Using Intelligent Group-Opting Strategy 期刊论文
ANALYTICAL CHEMISTRY, 2022, 页码: 9
作者:  Huang, Chuncui;  Hou, Meijie;  Yan, Jingyu;  Wang, Hui;  Wang, Yu;  Cao, Cuiyan;  Wang, Yaojun;  Gao, Huanyu;  Ma, Xinyue;  Zheng, Yi;  Bu, Dongbo;  Chai, Wengang;  Li, Yan;  Sun, Shiwei
收藏  |  浏览/下载：23/0  |  提交时间：2023/07/12
Microbiome Resilience and Health Implications for People in Half-Year Travel 期刊论文
FRONTIERS IN IMMUNOLOGY, 2022, 卷号: 13, 页码: 15
作者:  Cheng, Mingyue;  Liu, Hong;  Han, Maozhen;  Li, Shuai Cheng;  Bu, Dongbo;  Sun, Shiwei;  Hu, Zhiqiang;  Yang, Pengshuo;  Wang, Rui;  Liu, Yawen;  Chen, Feng;  Peng, Jianjun;  Peng, Hong;  Song, Hongxing;  Xia, Yang;  Chu, Liqun;  Zhou, Quan;  Guan, Feng;  Wu, Jing;  Tan, Guangming;  Ning, Kang
收藏  |  浏览/下载：37/0  |  提交时间：2022/12/07
travel  enterotype  microbiome  bi-directional plasticity  resilience  dietary shift  immunity  health  
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：27/0  |  提交时间：2022/12/07
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo
收藏  |  浏览/下载：26/0  |  提交时间：2022/12/07
deep learning and protein threading  protein alignment  protein structure prediction  
The effect of N-glycosylation of SARS-CoV-2 spike protein on the virus interaction with the host cell ACE2 receptor 期刊论文
ISCIENCE, 2021, 卷号: 24, 期号: 11, 页码: 15
作者:  Huang, Chuncui;  Tan, Zeshun;  Zhao, Keli;  Zou, Wenjun;  Wang, Hui;  Gao, Huanyu;  Sun, Shiwei;  Bu, Dongbo;  Chai, Wengang;  Li, Yan
收藏  |  浏览/下载：31/0  |  提交时间：2022/12/07
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph 期刊论文
BMC Bioinformatics, 2021, 卷号: 22, 期号: 1
作者:  Huang,Bin;  Wei,Guozheng;  Wang,Bing;  Ju,Fusong;  Zhong,Yi;  Shi,Zhuozheng;  Sun,Shiwei;  Bu,Dongbo
收藏  |  浏览/下载：50/0  |  提交时间：2021/12/01
Genome assembly  Gap filling  Scaffolding  Optical maps  Probabilistic search