中国科学院计算技术研究所机构知识库

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	Comparative Analysis of Chemical Cross-Linking Mass Spectrometry Data Indicates That Protein STY Residues Rarely React with N-Hydroxysuccinimide Ester Cross-Linkers 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2023, 卷号: 22, 期号: 8, 页码: 2593-2607 作者:  Cao, Yong;  Liu, Xin-Tong;  Mao, Peng-Zhi;  Chen, Zhen-Lin;  Tarn, Ching;  Dong, Meng-Qiu 收藏  |  浏览/下载：15/0  |  提交时间：2023/12/04 CXMS  XL-MS  NHS ester cross-linker  pLink  xiSearch  MeroX
	Characterization of collision-induced dissociation of deprotonated peptides of 4-16 amino acids using high-resolution mass spectrometry 期刊论文 INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2019, 卷号: 445, 页码: 8 作者:  Zuo, Mei-Qing;  Sun, Rui-Xiang;  Fang, Run-Qian;  He, Si-Min;  Dong, Meng-Qiu 收藏  |  浏览/下载：267/0  |  提交时间：2019/12/10 Negative-ion mass spectrometry  Peptide fragmentation  Collision-induced dissociation (CID)  Higher-energy collisional dissociation (HCD)  Fragmentation efficiency
	Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 11 作者:  Jones, Alexander X.;  Cao, Yong;  Tangi, Yu-Liang;  Wang, Jian-Hua;  Ding, Yue-He;  Tan, Hui;  Chen, Zhen-Lin;  Fang, Run-Qian;  Yin, Jili;  Chen, Rong-Chang;  Zhu, Xing;  She, Yang;  Huang, Niu;  Shao, Feng;  Ye, Keqiong;  Sun, Rui-Xiang;  He, Si-Min;  Lei, Xiaoguang;  Dong, Meng-Qiu 收藏  |  浏览/下载：102/0  |  提交时间：2019/12/10
	A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12 作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min 收藏  |  浏览/下载：102/0  |  提交时间：2019/12/10
	Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine 期刊论文 NATURE BIOTECHNOLOGY, 2018, 卷号: 36, 期号: 11, 页码: 1059-+ 作者:  Chi, Hao;  Liu, Chao;  Yang, Hao;  Zeng, Wen-Feng;  Wu, Long;  Zhou, Wen-Jing;  Wang, Rui-Min;  Niu, Xiu-Nan;  Ding, Yue-He;  Zhang, Yao;  Wang, Zhao-Wei;  Chen, Zhen-Lin;  Sun, Rui-Xiang;  Liu, Tao;  Tan, Guang-Ming;  Dong, Meng-Qiu;  Xu, Ping;  Zhang, Pei-Heng;  He, Si-Min 收藏  |  浏览/下载：95/0  |  提交时间：2019/08/16
	pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification 期刊论文 NATURE COMMUNICATIONS, 2017, 卷号: 8, 页码: 14 作者:  Liu, Ming-Qi;  Zeng, Wen-Feng;  Fang, Pan;  Cao, Wei-Qian;  Liu, Chao;  Yan, Guo-Quan;  Zhang, Yang;  Peng, Chao;  Wu, Jian-Qiang;  Zhang, Xiao-Jin;  Tu, Hui-Jun;  Chi, Hao;  Sun, Rui-Xiang;  Cao, Yong;  Dong, Meng-Qiu;  Jiang, Bi-Yun;  Huang, Jiang-Ming;  Shen, Hua-Li;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Peng-Yuan 收藏  |  浏览/下载：88/0  |  提交时间：2019/12/12
	Modeling Protein Excited-state Structures from "Over-length" Chemical Cross-links 期刊论文 JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 卷号: 292, 期号: 4, 页码: 1187-1196 作者:  Ding, Yue-He;  Gong, Zhou;  Dong, Xu;  Liu, Kan;  Liu, Zhu;  Liu, Chao;  He, Si-Min;  Dong, Meng-Qiu;  Tang, Chun 收藏  |  浏览/下载：64/0  |  提交时间：2019/12/12
	Increasing the Depth of Mass-Spectrometry-Based Structural Analysis of Protein Complexes through the Use of Multiple Cross-Linkers 期刊论文 ANALYTICAL CHEMISTRY, 2016, 卷号: 88, 期号: 8, 页码: 4461-4469 作者:  Ding, Yue-He;  Fan, Sheng-Bo;  Li, Shuang;  Feng, Bo-Ya;  Gao, Ning;  Ye, Keqiong;  He, Si-Min;  Dong, Meng-Qiu 收藏  |  浏览/下载：65/0  |  提交时间：2019/12/13
	Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states 期刊论文 ELIFE, 2016, 卷号: 5, 页码: 51 作者:  Tan, Dan;  Li, Qiang;  Zhang, Mei-Jun;  Liu, Chao;  Ma, Chengying;  Zhang, Pan;  Ding, Yue-He;  Fan, Sheng-Bo;  Tao, Li;  Yang, Bing;  Li, Xiangke;  Ma, Shoucai;  Liu, Junjie;  Feng, Boya;  Liu, Xiaohui;  Wang, Hong-Wei;  He, Si-Min;  Gao, Ning;  Ye, Keqiong;  Dong, Meng-Qiu;  Lei, Xiaoguang 收藏  |  浏览/下载：79/0  |  提交时间：2019/12/13
	pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data (Reprinted from vol 125, pg 89-97, 2015) 期刊论文 JOURNAL OF PROTEOMICS, 2015, 卷号: 129, 页码: 33-41 作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min 收藏  |  浏览/下载：60/0  |  提交时间：2019/12/13 Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS