中国科学院计算技术研究所机构知识库

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	The interplay between tissue-resident microbiome and host proteins by integrated multi-omics during progression of colorectal adenoma to carcinoma 期刊论文 IMETA, 2025, 页码: 37 作者:  Wu, Di;  Wang, An-Jun;  Bu, De-Chao;  Sun, Yan-Yan;  Li, Chen-Hao;  Hong, Yue-Mei;  Zhang, Shan;  Chen, Shi-Yang;  Zhou, Jin-An;  Zhang, Tian-Yi;  Yu, Min-Hao;  Ma, Yong-Jing;  Wang, Xiu-Li;  Xu, Jia;  He, Wei;  Heeschen, Christopher;  Chen, Jian-Feng;  Mao, Wen-Jun;  Ding, Hui;  Wu, Wen-Juan;  Zhao, Yi;  Wang, Hui;  Liu, Ning-Ning 收藏  |  浏览/下载：4/0  |  提交时间：2025/12/03 colorectal cancer  metagenomics  microbiota-host interaction  proteomics  tissue-resident microbiome
	LINS: A general medical Q&A framework for enhancing the quality and credibility of LLM-generated responses 期刊论文 NATURE COMMUNICATIONS, 2025, 卷号: 16, 期号: 1, 页码: 20 作者:  Wang, Sheng;  Zhao, Fangyuan;  Bu, Dechao;  Lu, Yunwei;  Gong, Ming;  Liu, Hongjie;  Yang, Zhaohui;  Zeng, Xiaoxi;  Yuan, Zhiyuan;  Wan, Baoping;  Sun, Jingbo;  Wu, Yang;  Zhao, Lianhe;  Wan, Xirun;  Huang, Wei;  Wang, Tao;  Xu, Mengtong;  Luo, Jianjun;  Liu, Jingjia;  Zheng, Jianjun;  Zhang, Wei;  Zhang, Kang;  Zhang, Hongjia;  Wang, Shu;  Chen, Runsheng;  Zhao, Yi 收藏  |  浏览/下载：5/0  |  提交时间：2025/12/03
	CIEC: Cross-tissue Immune Cell Type Enrichment and Expression Map Visualization for Cancer 期刊论文 GENOMICS PROTEOMICS & BIOINFORMATICS, 2025, 卷号: 23, 期号: 1, 页码: 8 作者:  He, Jinhua;  Luo, Haitao;  Wang, Wei;  Bu, Dechao;  Zou, Zhengkai;  Wang, Haolin;  Tang, Hongzhen;  Han, Zeping;  Luo, Wenfeng;  Shen, Jian;  Xie, Fangmei;  Zhao, Yi;  Xiang, Zhiming 收藏  |  浏览/下载：14/0  |  提交时间：2025/06/25 Cancer single-cell data  Cross-tissue analysis  Immune cell  Enrichment analysis  Expression map
	DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文 COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625 作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi 收藏  |  浏览/下载：55/0  |  提交时间：2024/05/20 Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs
	HERB 2.0: an updated database integrating clinical and experimental evidence for traditional Chinese medicine 期刊论文 NUCLEIC ACIDS RESEARCH, 2024, 页码: 11 作者:  Gao, Kai;  Liu, Liu;  Lei, Shuangshuang;  Li, Zhinong;  Huo, Peipei;  Wang, Zhihao;  Dong, Lei;  Deng, Wenxin;  Bu, Dechao;  Zeng, Xiaoxi;  Li, Chun;  Zhao, Yi;  Zhang, Wei;  Wang, Wei;  Wu, Yang 收藏  |  浏览/下载：32/0  |  提交时间：2025/06/25
	GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model 期刊论文 CELL RESEARCH, 2024, 页码: 16 作者:  Yang, Xiaodong;  Liu, Guole;  Feng, Guihai;  Bu, Dechao;  Wang, Pengfei;  Jiang, Jie;  Chen, Shubai;  Yang, Qinmeng;  Miao, Hefan;  Zhang, Yiyang;  Man, Zhenpeng;  Liang, Zhongming;  Wang, Zichen;  Li, Yaning;  Li, Zheng;  Liu, Yana;  Tian, Yao;  Liu, Wenhao;  Li, Cong;  Li, Ao;  Dong, Jingxi;  Hu, Zhilong;  Fang, Chen;  Cui, Lina;  Deng, Zixu;  Jiang, Haiping;  Cui, Wentao;  Zhang, Jiahao;  Yang, Zhaohui;  Li, Handong;  He, Xingjian;  Zhong, Liqun;  Zhou, Jiaheng;  Wang, Zijian;  Long, Qingqing;  Xu, Ping;  Wang, Hongmei;  Meng, Zhen;  Wang, Xuezhi;  Wang, Yangang;  Wang, Yong;  Zhang, Shihua;  Guo, Jingtao;  Zhao, Yi;  Zhou, Yuanchun;  Li, Fei;  Liu, Jing;  Chen, Yiqiang;  Yang, Ge;  Li, Xin 收藏  |  浏览/下载：43/0  |  提交时间：2024/12/06
	Optical Genome Mapping Reveals the Landscape of Structural Variations and Their Clinical Significance in HBOC-Related Breast Cancer 期刊论文 FRONTIERS IN BIOSCIENCE-LANDMARK, 2024, 卷号: 29, 期号: 1, 页码: 1-15 作者:  Cheng, Yanan;  Dong, Li;  Bu, Dechao;  Han, Lei;  Zhao, Yi;  Liu, Juntian;  Guo, Xiaojing;  Xu, Hanli;  Yu, Jinpu 收藏  |  浏览/下载：50/0  |  提交时间：2024/05/20 HBOC  breast cancer  optical genome mapping  structural variation  BRCA1/2  chromothripsis
	Genomic and transcriptomic profiling indicates the prognosis significance of mutational signature for TMB-high subtype in Chinese patients with gastric cancer 期刊论文 JOURNAL OF ADVANCED RESEARCH, 2023, 卷号: 51, 页码: 121-134 作者:  Cheng, Yanan;  Bu, Dechao;  Zhang, Qiaoling;  Sun, Rebecca;  Lyle, Stephen;  Zhao, Gang;  Dong, Li;  Li, Hui;  Zhao, Yi;  Yu, Jinpu;  Hao, Xishan 收藏  |  浏览/下载：57/0  |  提交时间：2023/12/04 Gastric cancer  Comprehensive genomic profiling  TMB  Mutational signature  Tumor metabolism
	What makes a successful rebuttal in computer science conferences?: A perspective on social interaction 期刊论文 JOURNAL OF INFORMETRICS, 2023, 卷号: 17, 期号: 3, 页码: 14 作者:  Huang, Junjie;  Huang, Win-bin;  Bu, Yi;  Cao, Qi;  Shen, Huawei;  Cheng, Xueqi 收藏  |  浏览/下载：52/0  |  提交时间：2023/12/04 Peer review  Rebuttal analysis  Social network analysis  Social interaction  Rebuttal strategy  Rebuttal success prediction
	Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文 BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9 作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi 收藏  |  浏览/下载：49/0  |  提交时间：2023/12/04 immune checkpoints inhibitors  deep learning  graph neural networks