中国科学院计算技术研究所机构知识库

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	DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures 期刊论文 COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 617-625 作者:  Qiao, Yixuan;  Yang, Rui;  Liu, Yang;  Chen, Jiaxin;  Zhao, Lianhe;  Huo, Peipei;  Wang, Zhihao;  Bu, Dechao;  Wu, Yang;  Zhao, Yi 收藏  |  浏览/下载：16/0  |  提交时间：2024/05/20 Information fusion  Deep learning  RNA -binding proteins  In vivo RNA structures  Motifs
	GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model 期刊论文 CELL RESEARCH, 2024, 页码: 16 作者:  Yang, Xiaodong;  Liu, Guole;  Feng, Guihai;  Bu, Dechao;  Wang, Pengfei;  Jiang, Jie;  Chen, Shubai;  Yang, Qinmeng;  Miao, Hefan;  Zhang, Yiyang;  Man, Zhenpeng;  Liang, Zhongming;  Wang, Zichen;  Li, Yaning;  Li, Zheng;  Liu, Yana;  Tian, Yao;  Liu, Wenhao;  Li, Cong;  Li, Ao;  Dong, Jingxi;  Hu, Zhilong;  Fang, Chen;  Cui, Lina;  Deng, Zixu;  Jiang, Haiping;  Cui, Wentao;  Zhang, Jiahao;  Yang, Zhaohui;  Li, Handong;  He, Xingjian;  Zhong, Liqun;  Zhou, Jiaheng;  Wang, Zijian;  Long, Qingqing;  Xu, Ping;  Wang, Hongmei;  Meng, Zhen;  Wang, Xuezhi;  Wang, Yangang;  Wang, Yong;  Zhang, Shihua;  Guo, Jingtao;  Zhao, Yi;  Zhou, Yuanchun;  Li, Fei;  Liu, Jing;  Chen, Yiqiang;  Yang, Ge;  Li, Xin 收藏  |  浏览/下载：4/0  |  提交时间：2024/12/06
	Optical Genome Mapping Reveals the Landscape of Structural Variations and Their Clinical Significance in HBOC-Related Breast Cancer 期刊论文 FRONTIERS IN BIOSCIENCE-LANDMARK, 2024, 卷号: 29, 期号: 1, 页码: 1-15 作者:  Cheng, Yanan;  Dong, Li;  Bu, Dechao;  Han, Lei;  Zhao, Yi;  Liu, Juntian;  Guo, Xiaojing;  Xu, Hanli;  Yu, Jinpu 收藏  |  浏览/下载：14/0  |  提交时间：2024/05/20 HBOC  breast cancer  optical genome mapping  structural variation  BRCA1/2  chromothripsis
	Genomic and transcriptomic profiling indicates the prognosis significance of mutational signature for TMB-high subtype in Chinese patients with gastric cancer 期刊论文 JOURNAL OF ADVANCED RESEARCH, 2023, 卷号: 51, 页码: 121-134 作者:  Cheng, Yanan;  Bu, Dechao;  Zhang, Qiaoling;  Sun, Rebecca;  Lyle, Stephen;  Zhao, Gang;  Dong, Li;  Li, Hui;  Zhao, Yi;  Yu, Jinpu;  Hao, Xishan 收藏  |  浏览/下载：17/0  |  提交时间：2023/12/04 Gastric cancer  Comprehensive genomic profiling  TMB  Mutational signature  Tumor metabolism
	Dominant neoantigen verification in hepatocellular carcinoma by a single-plasmid system coexpressing patient HLA and antigen 期刊论文 JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2023, 卷号: 11, 期号: 4, 页码: 16 作者:  Chen, Pu;  Chen, Dongbo;  Bu, Dechao;  Gao, Jie;  Qin, Wanying;  Deng, Kangjian;  Ren, Liying;  She, Shaoping;  Xu, Wentao;  Yang, Yao;  Xie, Xingwang;  Liao, Weijia;  Chen, Hongsong 收藏  |  浏览/下载：16/0  |  提交时间：2023/12/04 Liver Neoplasms  Antigens  Neoplasm  Immunotherapy  Immunoassay  Immunogenicity  Vaccine
	Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文 BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9 作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi 收藏  |  浏览/下载：18/0  |  提交时间：2023/12/04 immune checkpoints inhibitors  deep learning  graph neural networks
	Rejuvenation remadels transcriptional network to improve rhizogenesis in mature Juglans tree 期刊论文 TREE PHYSIOLOGY, 2021, 卷号: 41, 期号: 10, 页码: 1938-1952 作者:  Song, Xiaobo;  Liu, Hao;  Bu, Dechao;  Xu, Huzhi;  Ma, Qingguo;  Pei, Dong 收藏  |  浏览/下载：35/0  |  提交时间：2022/06/21 adventitious root  BGL12  gene regulatory network  Juglans  rejuvenation
	High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文 FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23 作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui 收藏  |  浏览/下载：37/0  |  提交时间：2022/06/21 compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature
	ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs 期刊论文 NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W459-W468 作者:  Zhang, Yuwei;  Bu, Dechao;  Huo, Peipei;  Wang, Zhihao;  Rong, Hao;  Li, Yanguo;  Liu, Jingjia;  Ye, Meng;  Wu, Yang;  Jiang, Zheng;  Liao, Qi;  Zhao, Yi 收藏  |  浏览/下载：46/0  |  提交时间：2021/12/01
	KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis 期刊论文 NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W317-W325 作者:  Bu, Dechao;  Luo, Haitao;  Huo, Peipei;  Wang, Zhihao;  Zhang, Shan;  He, Zihao;  Wu, Yang;  Zhao, Lianhe;  Liu, Jingjia;  Guo, Jincheng;  Fang, Shuangsang;  Cao, Wanchen;  Yi, Lan;  Zhao, Yi;  Kong, Lei 收藏  |  浏览/下载：101/0  |  提交时间：2021/12/01