中国科学院计算技术研究所机构知识库

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	Pathway-Aware Multimodal Transformer (PAMT): Integrating Pathological Image and Gene Expression for Interpretable Cancer Survival Analysis 期刊论文 IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2026, 卷号: 48, 期号: 1, 页码: 896-913 作者:  Yan, Rui;  Zhang, Xueyuan;  Jiang, Zihang;  Wang, Baizhi;  Bian, Xiuwu;  Ren, Fei;  Zhou, S. Kevin 收藏  |  浏览/下载：1/0  |  提交时间：2026/05/25 Pathology  Cancer  Transformers  Feature extraction  Data models  Biological system modeling  Analytical models  Deep learning  Semantics  Multimodal transformer  model interpretability  survival analysis  pathological image analysis  gene expression  gene expression
	Computational pathology in precision oncology: Evolution from task-specific models to foundation models 期刊论文 CHINESE MEDICAL JOURNAL, 2025, 卷号: 138, 期号: 22, 页码: 2868-2878 作者:  Wang, Yuhao;  Gu, Yunjie;  Zhang, Xueyuan;  Wang, Baizhi;  Wang, Rundong;  Li, Xiaolong;  Liu, Yudong;  Qu, Fengmei;  Ren, Fei;  Yan, Rui;  Zhou, S. Kevin 收藏  |  浏览/下载：1/0  |  提交时间：2026/05/25 Computational pathology  Artificial intelligence  Deep learning  Foundation models  Precision oncology
	Sparse and Hierarchical Transformer for Survival Analysis on Whole Slide Images 期刊论文 IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2024, 卷号: 28, 期号: 1, 页码: 7-18 作者:  Yan, Rui;  Lv, Zhilong;  Yang, Zhidong;  Lin, Senlin;  Zheng, Chunhou;  Zhang, Fa 收藏  |  浏览/下载：59/0  |  提交时间：2024/05/20 Hierarchical representation  pathological image analysis  sparse transformer  survival analysis
	TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420 作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa 收藏  |  浏览/下载：103/0  |  提交时间：2024/05/20 Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data
	Histopathological bladder cancer gene mutation prediction with hierarchical deep multiple-instance learning 期刊论文 MEDICAL IMAGE ANALYSIS, 2023, 卷号: 87, 页码: 13 作者:  Yan, Rui;  Shen, Yijun;  Zhang, Xueyuan;  Xu, Peihang;  Wang, Jun;  Li, Jintao;  Ren, Fei;  Ye, Dingwei;  Zhou, S. Kevin 收藏  |  浏览/下载：80/0  |  提交时间：2023/12/04 Bladder cancer  Contrastive learning  Gene mutation prediction  Histopathological image analysis  Multiple instance learning
	基于多尺度注意力机制的真菌显微图像分类方法 期刊论文 协和医学杂志, 2023, 卷号: 14, 期号: 1, 页码: 139 作者:  张雪媛;  许鸿雁;  董跃明;  刘丹凤;  孙鹏蕊;  颜锐;  崔洪亮;  雷红;  任菲 收藏  |  浏览/下载：77/0  |  提交时间：2024/05/20 fungal  convolutional neural network  image classification  multi-scale attention mechanism  真菌  卷积神经网络  图像分类  多尺度注意力机制
	Divide-and-Attention Network for HE-Stained Pathological Image Classification 期刊论文 BIOLOGY-BASEL, 2022, 卷号: 11, 期号: 7, 页码: 17 作者:  Yan, Rui;  Yang, Zhidong;  Li, Jintao;  Zheng, Chunhou;  Zhang, Fa 收藏  |  浏览/下载：82/0  |  提交时间：2022/12/07 pathological image classification  attention mechanism  convolutional neural network  knowledge embedding
	Nuclei-Guided Network for Breast Cancer Grading in HE-Stained Pathological Images 期刊论文 SENSORS, 2022, 卷号: 22, 期号: 11, 页码: 15 作者:  Yan, Rui;  Ren, Fei;  Li, Jintao;  Rao, Xiaosong;  Lv, Zhilong;  Zheng, Chunhou;  Zhang, Fa 收藏  |  浏览/下载：84/0  |  提交时间：2022/12/07 breast cancer grading  histopathological image  nuclei segmentation  convolutional neural network  attention mechanism
	VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms 期刊论文 COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2022, 卷号: 221, 页码: 14 作者:  Hao, Yu;  Wan, Xiaohua;  Yan, Rui;  Liu, Zhiyong;  Li, Jintao;  Zhang, Shihua;  Cui, Xuefeng;  Zhang, Fa 收藏  |  浏览/下载：72/0  |  提交时间：2023/07/12 Cryo-ET  Sub-tomogram averaging  Particle localization  Particle classification  Convolutional neural networks
	Richer fusion network for breast cancer classification based on multimodal data 期刊论文 BMC Medical Informatics and Decision Making, 2021, 卷号: 21, 期号: Suppl 1 作者:  Yan,Rui;  Zhang,Fa;  Rao,Xiaosong;  Lv,Zhilong;  Li,Jintao;  Zhang,Lingling;  Liang,Shuang;  Li,Yilin;  Ren,Fei;  Zheng,Chunhou;  Liang,Jun 收藏  |  浏览/下载：90/0  |  提交时间：2021/12/01 Pathological image  Electronic medical record  Multimodal fusion  Breast cancer classification  Convolutional neural network