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Pathway-Aware Multimodal Transformer (PAMT): Integrating Pathological Image and Gene Expression for Interpretable Cancer Survival Analysis 期刊论文
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2026, 卷号: 48, 期号: 1, 页码: 896-913
作者:  Yan, Rui;  Zhang, Xueyuan;  Jiang, Zihang;  Wang, Baizhi;  Bian, Xiuwu;  Ren, Fei;  Zhou, S. Kevin
收藏  |  浏览/下载：29/0  |  提交时间：2026/05/25
Pathology  Cancer  Transformers  Feature extraction  Data models  Biological system modeling  Analytical models  Deep learning  Semantics  Multimodal transformer  model interpretability  survival analysis  pathological image analysis  gene expression  gene expression  
Computational pathology in precision oncology: Evolution from task-specific models to foundation models 期刊论文
CHINESE MEDICAL JOURNAL, 2025, 卷号: 138, 期号: 22, 页码: 2868-2878
作者:  Wang, Yuhao;  Gu, Yunjie;  Zhang, Xueyuan;  Wang, Baizhi;  Wang, Rundong;  Li, Xiaolong;  Liu, Yudong;  Qu, Fengmei;  Ren, Fei;  Yan, Rui;  Zhou, S. Kevin
收藏  |  浏览/下载：25/0  |  提交时间：2026/05/25
Computational pathology  Artificial intelligence  Deep learning  Foundation models  Precision oncology  
Sparse and Hierarchical Transformer for Survival Analysis on Whole Slide Images 期刊论文
IEEE JOURNAL OF BIOMEDICAL AND HEALTH INFORMATICS, 2024, 卷号: 28, 期号: 1, 页码: 7-18
作者:  Yan, Rui;  Lv, Zhilong;  Yang, Zhidong;  Lin, Senlin;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载：102/0  |  提交时间：2024/05/20
Hierarchical representation  pathological image analysis  sparse transformer  survival analysis  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载：145/0  |  提交时间：2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data  
Histopathological bladder cancer gene mutation prediction with hierarchical deep multiple-instance learning 期刊论文
MEDICAL IMAGE ANALYSIS, 2023, 卷号: 87, 页码: 13
作者:  Yan, Rui;  Shen, Yijun;  Zhang, Xueyuan;  Xu, Peihang;  Wang, Jun;  Li, Jintao;  Ren, Fei;  Ye, Dingwei;  Zhou, S. Kevin
收藏  |  浏览/下载：128/0  |  提交时间：2023/12/04
Bladder cancer  Contrastive learning  Gene mutation prediction  Histopathological image analysis  Multiple instance learning  
Divide-and-Attention Network for HE-Stained Pathological Image Classification 期刊论文
BIOLOGY-BASEL, 2022, 卷号: 11, 期号: 7, 页码: 17
作者:  Yan, Rui;  Yang, Zhidong;  Li, Jintao;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载：126/0  |  提交时间：2022/12/07
pathological image classification  attention mechanism  convolutional neural network  knowledge embedding  
Nuclei-Guided Network for Breast Cancer Grading in HE-Stained Pathological Images 期刊论文
SENSORS, 2022, 卷号: 22, 期号: 11, 页码: 15
作者:  Yan, Rui;  Ren, Fei;  Li, Jintao;  Rao, Xiaosong;  Lv, Zhilong;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载：104/0  |  提交时间：2022/12/07
breast cancer grading  histopathological image  nuclei segmentation  convolutional neural network  attention mechanism  
VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms 期刊论文
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2022, 卷号: 221, 页码: 14
作者:  Hao, Yu;  Wan, Xiaohua;  Yan, Rui;  Liu, Zhiyong;  Li, Jintao;  Zhang, Shihua;  Cui, Xuefeng;  Zhang, Fa
收藏  |  浏览/下载：121/0  |  提交时间：2023/07/12
Cryo-ET  Sub-tomogram averaging  Particle localization  Particle classification  Convolutional neural networks  
Breast cancer histopathological image classification using a hybrid deep neural network 期刊论文
METHODS, 2020, 卷号: 173, 页码: 52-60
作者:  Yan, Rui;  Ren, Fei;  Wang, Zihao;  Wang, Lihua;  Zhang, Tong;  Liu, Yudong;  Rao, Xiaosong;  Zheng, Chunhou;  Zhang, Fa
收藏  |  浏览/下载：137/0  |  提交时间：2020/12/10
Breast cancer  Histopathological images  Image classification  Deep neural network  Dataset