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TiltRec: an ultra-fast and open-source toolkit for cryo-electron tomographic reconstruction 期刊论文
BIOINFORMATICS, 2025, 卷号: 41, 期号: 3, 页码: 5
作者:  Jiao, Yanxin;  Li, Hongjia;  Xue, Yang;  Yang, Guoliang;  Qi, Lei;  Zhang, Fa;  Zang, Dawei;  Han, Renmin
收藏  |  浏览/下载：1/0  |  提交时间：2025/06/25
CIEC: Cross-tissue Immune Cell Type Enrichment and Expression Map Visualization for Cancer 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2025, 卷号: 23, 期号: 1, 页码: 8
作者:  He, Jinhua;  Luo, Haitao;  Wang, Wei;  Bu, Dechao;  Zou, Zhengkai;  Wang, Haolin;  Tang, Hongzhen;  Han, Zeping;  Luo, Wenfeng;  Shen, Jian;  Xie, Fangmei;  Zhao, Yi;  Xiang, Zhiming
收藏  |  浏览/下载：3/0  |  提交时间：2025/06/25
Cancer single-cell data  Cross-tissue analysis  Immune cell  Enrichment analysis  Expression map  
Enzyme Repertoires and Genomic Insights into Lycium barbarum Pectin Polysaccharide Biosynthesis 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2024, 卷号: 22, 期号: 6, 页码: 15
作者:  Yue, Haiyan;  Tang, Yiheng;  Li, Aixuan;  Zhang, Lili;  Niu, Yiwei;  Zhang, Yiming;  Wang, Hao;  Luo, Jianjun;  Zhao, Yi;  He, Shunmin;  Chen, Chang;  Chen, Runsheng
收藏  |  浏览/下载：5/0  |  提交时间：2025/06/25
Lycium barbarum  Lycium barbarum pectin polysaccharide  Phylogenetic expansion  lncRNA  Rhamnogalacturonan I rhamnosyltransferase  
GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states 期刊论文
BMC BIOINFORMATICS, 2024, 卷号: 25, 期号: 1, 页码: 16
作者:  Liu, Fan;  Zhou, Han;  Li, Xiaonong;  Zhou, Liangliang;  Yu, Chungong;  Zhang, Haicang;  Bu, Dongbo;  Liang, Xinmiao
收藏  |  浏览/下载：17/0  |  提交时间：2024/12/06
G-protein coupled receptor  State-specific structure  Binding site  Key residue  Database  
CPU-GPU Cooperative QoS Optimization of Personalized Digital Healthcare Using Machine Learning and Swarm Intelligence 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 卷号: 21, 期号: 4, 页码: 521-533
作者:  Cao, Kun;  Cui, Yangguang;  Li, Liying;  Zhou, Junlong;  Hu, Shiyan
收藏  |  浏览/下载：13/0  |  提交时间：2024/12/06
Electronic healthcare  Quality of service  Graphics processing units  Central Processing Unit  Reliability  Machine learning  Estimation  CPU-GPU MPSoCs  machine learning  lifetime reliability  personalized digital healthcare  swarm intelligence  
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms (vol 20, pg 446, 2022) 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2024, 卷号: 22, 期号: 1, 页码: 1
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载：47/0  |  提交时间：2024/12/06
PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2024, 卷号: 21, 期号: 3, 页码: 480-491
作者:  Ma, Ke;  Li, Jiawei;  Zhao, Mengyuan;  Zamit, Ibrahim;  Lin, Bin;  Guo, Fei;  Tang, Jijun
收藏  |  浏览/下载：19/0  |  提交时间：2024/12/06
DNA  Proteins  Organisms  Biology  Proteomics  Gene expression  Feature extraction  Transcription factor  TF-target gene interactions  DNA sequence  graph neural network  personalized PageRank  
A new paradigm for applying deep learning to protein-ligand interaction prediction 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 25, 期号: 3, 页码: 12
作者:  Wang, Zechen;  Wang, Sheng;  Li, Yangyang;  Guo, Jingjing;  Wei, Yanjie;  Mu, Yuguang;  Zheng, Liangzhen;  Li, Weifeng
收藏  |  浏览/下载：17/0  |  提交时间：2024/12/06
protein-ligand interaction  scoring function  deep learning  graph neural network  
SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：46/0  |  提交时间：2024/05/20
Deep learning  protein structure prediction  
TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3411-3420
作者:  Lv, Zhilong;  Lin, Yuexiao;  Yan, Rui;  Wang, Ying;  Zhang, Fa
收藏  |  浏览/下载：60/0  |  提交时间：2024/05/20
Cancer  Genomics  Bioinformatics  Transformers  Tumors  Feature extraction  Prognostics and health management  Survival analysis  multi-modal learning  transformer  histopathological slides  genomic data