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Systematic Survey of the Alteration of the Faecal Microbiota in Rats With Gastrointestinal Disorder and Modulation by Multicomponent Drugs 期刊论文
FRONTIERS IN PHARMACOLOGY, 2021, 卷号: 12, 页码: 13
作者:  Wu, Yue;  Wu, Yang;  Wu, Hongwei;  Wu, Changxun;  Ji, Enhui;  Xu, Jing;  Zhang, Yi;  Wei, Junying;  Zhao, Yi;  Yang, Hongjun
收藏  |  浏览/下载：25/0  |  提交时间：2022/06/21
XEFP  functional dyspepsia  intestinal flora  metabonomics  network pharmacology  
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文
FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23
作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui
收藏  |  浏览/下载：28/0  |  提交时间：2022/06/21
compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature  
Tumor cells generate astrocyte-like cells that contribute to SHH-driven medulloblastoma relapse 期刊论文
JOURNAL OF EXPERIMENTAL MEDICINE, 2021, 卷号: 218, 期号: 9, 页码: 22
作者:  Guo, Duancheng;  Wang, Yuan;  Cheng, Yan;  Liao, Shengyou;  Hu, Jian;  Du, Fang;  Xu, Gang;  Liu, Yongqiang;  Cai, Kathy Q.;  Cheung, Martin;  Wainwright, Brandon J.;  Lu, Q. Richard;  Zhao, Yi;  Yang, Zeng-jie
收藏  |  浏览/下载：43/0  |  提交时间：2021/12/01
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W459-W468
作者:  Zhang, Yuwei;  Bu, Dechao;  Huo, Peipei;  Wang, Zhihao;  Rong, Hao;  Li, Yanguo;  Liu, Jingjia;  Ye, Meng;  Wu, Yang;  Jiang, Zheng;  Liao, Qi;  Zhao, Yi
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W317-W325
作者:  Bu, Dechao;  Luo, Haitao;  Huo, Peipei;  Wang, Zhihao;  Zhang, Shan;  He, Zihao;  Wu, Yang;  Zhao, Lianhe;  Liu, Jingjia;  Guo, Jincheng;  Fang, Shuangsang;  Cao, Wanchen;  Yi, Lan;  Zhao, Yi;  Kong, Lei
收藏  |  浏览/下载：50/0  |  提交时间：2021/12/01
Transcriptome landscape of double negative T cells by single-cell RNA sequencing 期刊论文
JOURNAL OF AUTOIMMUNITY, 2021, 卷号: 121, 页码: 15
作者:  Yang, Lu;  Zhu, Yanbing;  Tian, Dan;  Wang, Song;  Guo, Jincheng;  Sun, Guangyong;  Jin, Hua;  Zhang, Chunpan;  Shi, Wen;  Gershwin, M. Eric;  Zhang, Zhongtao;  Zhao, Yi;  Zhang, Dong
收藏  |  浏览/下载：34/0  |  提交时间：2021/12/01
Double negative T cell  Single-cell RNA sequencing  Unconventional T cells  Inflammation  Regulatory T cells  Innate immunity  
Imbalance of TGF-beta 1/BMP-7 pathways induced by M2-polarized macrophages promotes hepatocellular carcinoma aggressiveness 期刊论文
MOLECULAR THERAPY, 2021, 卷号: 29, 期号: 6, 页码: 2067-2087
作者:  Ning, Junya;  Ye, Yingnan;  Bu, Dechao;  Zhao, Gang;  Song, Tianqiang;  Liu, Pengpeng;  Yu, Wenwen;  Wang, Hailong;  Li, Hui;  Ren, Xiubao;  Ying, Guoguang;  Zhao, Yi;  Yu, Jinpu
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 卷号: 19, 期号: 3, 页码: 377-393
作者:  Luo, Haitao;  Bu, Dechao;  Shao, Lijuan;  Li, Yang;  Sun, Liang;  Wang, Ce;  Wang, Jing;  Yang, Wei;  Yang, Xiaofei;  Dong, Jun;  Zhao, Yi;  Li, Furong
收藏  |  浏览/下载：19/0  |  提交时间：2022/12/07
Long non-coding RNA  Transcriptome assembly  Metacell  Immune regulation  Functional annotation  
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: D1, 页码: D165-D171
作者:  Zhao, Lianhe;  Wang, Jiajia;  Li, Yanyan;  Song, Tingrui;  Wu, Yang;  Fang, Shuangsang;  Bu, Dechao;  Li, Hui;  Sun, Liang;  Pei, Dong;  Zheng, Yu;  Huang, Jianqin;  Xu, Mingqing;  Chen, Runsheng;  Zhao, Yi;  He, Shunmin
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: D1, 页码: D1197-D1206
作者:  Fang, ShuangSang;  Dong, Lei;  Liu, Liu;  Guo, JinCheng;  Zhao, LianHe;  Zhang, JiaYuan;  Bu, DeChao;  Liu, XinKui;  Huo, PeiPei;  Cao, WanChen;  Dong, QiongYe;  Wu, JiaRui;  Zeng, Xiaoxi;  Wu, Yang;  Zhao, Yi
收藏  |  浏览/下载：36/0  |  提交时间：2021/12/01
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: D1, 页码: D18-D28
作者:  Xue, Yongbiao;  Bao, Yiming;  Zhang, Zhang;  Zhao, Wenming;  Xiao, Jingfa;  He, Shunmin;  Zhang, Guoqing;  Li, Yixue;  Zhao, Guoping;  Chen, Runsheng;  Song, Shuhui;  Ma, Lina;  Zou, Dong;  Tian, Dongmei;  Li, Cuiping;  Zhu, Junwei;  Gong, Zheng;  Chen, Meili;  Wang, Anke;  Ma, Yingke;  Li, Mengwei;  Teng, Xufei;  Cui, Ying;  Duan, Guangya;  Zhang, Mochen;  Jin, Tong;  Shi, Chengmin;  Du, Zhenglin;  Zhang, Yadong;  Liu, Chuandong;  Li, Rujiao;  Zeng, Jingyao;  Hao, Lili;  Jiang, Shuai;  Chen, Hua;  Han, Dali;  Yongbiao, Xue;  Zhang, Tao;  Kang, Wang;  Qu, Jing;  Zhang, Weiqi;  Liu, Guang-Hui;  Liu, Lin;  Zhang, Yang;  Niu, Guangyi;  Zhu, Tongtong;  Feng, Changrui;  Liu, Xiaonan;  Zhang, Yuansheng;  Li, Zhao;  Chen, Ruru;  Li, Qianpeng;  Hua, Zhongyi;  Jiang, Chao;  Chen, Ziyuan;  He, Fangshu;  Zhao, Yuyang;  Jin, Yan;  Huang, Luqi;  Yuan, Yuan;  Zhou, Chenfen;  Xu, Qingwei;  He, Sheng;  Ye, Wei;  Cao, Ruifang;  Wang, Pengyu;  Ling, Yunchao;  Yan, Xing;  Wang, Qingzhong;  Du, Qiang;  Zong, Wenting;  Kang, Hongen;  Xiong, Zhuang;  Huan, Wendi;  Zhang, Sirui;  Xia, Qiguang;  Fan, Xiaojuan;  Wang, Zefeng;  Chen, Xu;  Chen, Tingting;  Zhang, Sisi;  Tang, Bixia;  Dong, Lili;  Zhang, Zhewen;  Wang, Zhonghuang;  Kang, Hailong;  Wang, Yanqing;  Wu, Song;  Wang, Honggen;  Chen, Ming;  Liu, Chang;  Xiong, Yujia;  Shao, Xueying;  Li, Yanyan;  Zhou, Honghong;  Chen, Xiaomin;  Zheng, Yu;  Kang, Quan;  Hao, Di;  Zhang, Lili;  Luo, Huaxia;  Hao, Yajing;  Zhang, Peng;  Nie, Zhi;  Yu, Shuhuan;  Yang, Fei;  Sang, Jian;  Li, Zhaohua;  Zhang, Xiangquan;  Zhou, Qing;  Zhai, Shuang;  Zhang, Yaping;  Wang, Guodong;  Zhu, Qianghui;  Li, Xin;  Li, Menghua;  Yan, Jun;  Li, Chen;  Wang, Zhennan;  Wang, Xiangfeng;  Liu, Yuanming;  Luo, Hong;  Wu, Xiaoyuan;  Jing, HaiChun;  Song, Tinrui;  Zhao, Yi;  Mehmood, Furrukh;  Ali, Shahid;  Ali, Amjad;  Saleem, Shoaib;  Hussain, Irfan;  Abbasi, Amir A.;  Zuo, Zhixiang;  Ren, Jian;  Zhang, Xinxin;  Xiao, Yun;  Li, Xia;  Tu, Yiran;  Xue, Yu;  Wu, Wanying;  Ji, Peifeng;  Zhao, Fangqing;  Meng, Xianwen;  Peng, Di;  Luo, Hao;  Gao, Feng;  Ning, Wanshan;  Lin, Shaofeng;  Liu, Teng;  Guo, An-Yuan;  Yuan, Hao;  Zhang, Yong E.;  Tan, Xiaodan;  Zhang, Weizhi;  Xie, Yubin;  Wang, Chenwei;  Liu, Chun-Jie;  Yang, De-Chang;  Tian, Feng;  Gao, Ge;  Tang, Dachao;  Yao, Lan;  Cui, Qinghua;  An, Ni A.;  Li, Chuan-Yun;  Luo, XiaoTong
收藏  |  浏览/下载：80/0  |  提交时间：2021/12/01
A network-based machine-learning framework to identify both functional modules and disease genes 期刊论文
HUMAN GENETICS, 2021, 页码: 17
作者:  Yang, Kuo;  Lu, Kezhi;  Wu, Yang;  Yu, Jian;  Liu, Baoyan;  Zhao, Yi;  Chen, Jianxin;  Zhou, Xuezhong
收藏  |  浏览/下载：29/0  |  提交时间：2021/12/01
FangNet: Mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 页码: 62-71
作者:  Bu, Dechao;  Xia, Yan;  Zhang, JiaYuan;  Cao, Wanchen;  Huo, Peipei;  Wang, Zhihao;  He, Zihao;  Ding, Linyi;  Wu, Yang;  Zhang, Shan;  Gao, Kai;  Yu, He;  Liu, Tiegang;  Ding, Xia;  Gu, Xiaohong;  Zhao, Yi
收藏  |  浏览/下载：34/0  |  提交时间：2021/12/01
Formulas  Herb  Symptom  TCM  
DeepOmix: A scalable and interpretable multi-omics deep learning framework and application in cancer survival analysis 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 卷号: 19, 页码: 2719-2725
作者:  Zhao, Lianhe;  Dong, Qiongye;  Luo, Chunlong;  Wu, Yang;  Bu, Dechao;  Qi, Xiaoning;  Luo, Yufan;  Zhao, Yi
收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01
Multi-omics  Deep learning  Survival analysis  Prognosis prediction  Interpretable model