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Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:45/0  |  提交时间:2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization  
Toward Automated Identification of Glycan Branching Patterns Using Multistage Mass Spectrometry with Intelligent Precursor Selection 期刊论文
ANALYTICAL CHEMISTRY, 2018, 卷号: 90, 期号: 24, 页码: 14412-14422
作者:  Sun, Shiwei;  Huang, Chuncui;  Wang, Yaojun;  Liu, Yaming;  Zhang, Jingwei;  Zhou, Jinyu;  Gao, Feng;  Yang, Fei;  Chen, Runsheng;  Mulloy, Barbara;  Chai, Wengang;  Li, Yan;  Bu, Dongbo
收藏  |  浏览/下载:252/0  |  提交时间:2019/04/03
TagDict: Prediction of Theoretical Spectra of Peptides Based on A Tag Dictionary 期刊论文
CURRENT BIOINFORMATICS, 2018, 卷号: 13, 期号: 5, 页码: 444-449
作者:  Wang, Yaojun;  Zhang, Jingwei;  Bu, Dongbo;  Sun, Shiwei
收藏  |  浏览/下载:66/0  |  提交时间:2019/12/10
Mass spectrometry  theoretical spectrum prediction  database search  peptide identification  TagDict  MassAnalyzer  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:  Zhu, Jianwei;  Zhang, Haicang;  Li, Shuai Cheng;  Wang, Chao;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/10
Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 11
作者:  Gong, Hai'e;  Zhang, Haicang;  Zhu, Jianwei;  Wang, Chao;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/12
Protein structure  Burial states of residue  Conditional random field  Residue correlation  
Insights into the transmission of respiratory infectious diseases through empirical human contact networks 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 11
作者:  Huang, Chunlin;  Liu, Xingwu;  Sun, Shiwei;  Li, Shuai Cheng;  Deng, Minghua;  He, Guangxue;  Zhang, Haicang;  Wang, Chao;  Zhou, Yang;  Zhao, Yanlin;  Bu, Dongbo
收藏  |  浏览/下载:66/0  |  提交时间:2019/12/13