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Benchmarking spatial clustering methods with spatially resolved transcriptomics data 期刊论文
NATURE METHODS, 2024, 页码: 25
作者:  Yuan, Zhiyuan;  Zhao, Fangyuan;  Lin, Senlin;  Zhao, Yu;  Yao, Jianhua;  Cui, Yan;  Zhang, Xiao-Yong;  Zhao, Yi
收藏  |  浏览/下载：3/0  |  提交时间：2024/05/20
Genomic and transcriptomic profiling indicates the prognosis significance of mutational signature for TMB-high subtype in Chinese patients with gastric cancer 期刊论文
JOURNAL OF ADVANCED RESEARCH, 2023, 卷号: 51, 页码: 121-134
作者:  Cheng, Yanan;  Bu, Dechao;  Zhang, Qiaoling;  Sun, Rebecca;  Lyle, Stephen;  Zhao, Gang;  Dong, Li;  Li, Hui;  Zhao, Yi;  Yu, Jinpu;  Hao, Xishan
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
Gastric cancer  Comprehensive genomic profiling  TMB  Mutational signature  Tumor metabolism  
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 2, 页码: 9
作者:  Zhao, Lianhe;  Qi, Xiaoning;  Chen, Yang;  Qiao, Yixuan;  Bu, Dechao;  Wu, Yang;  Luo, Yufan;  Wang, Sheng;  Zhang, Rui;  Zhao, Yi
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
immune checkpoints inhibitors  deep learning  graph neural networks  
A deep learning model using convolutional neural networks for caries detection and recognition with endoscopes 期刊论文
ANNALS OF TRANSLATIONAL MEDICINE, 2022, 页码: 11
作者:  Zang, Xiaoyi;  Luo, Chunlong;  Qiao, Bo;  Jin, Nenghao;  Zhao, Yi;  Zhang, Haizhong
收藏  |  浏览/下载：14/0  |  提交时间：2023/07/12
Artificial intelligence (AI)  caries lesions  endoscopes  deep learning  
NPInter v5.0: ncRNA interaction database in a new era 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 页码: 8
作者:  Zheng, Yu;  Luo, Huaxia;  Teng, Xueyi;  Hao, Xinpei;  Yan, Xiaoyu;  Tang, Yiheng;  Zhang, Wanyu;  Wang, Yuanxin;  Zhang, Peng;  Li, Yanyan;  Zhao, Yi;  Chen, Runsheng;  He, Shunmin
收藏  |  浏览/下载：16/0  |  提交时间：2023/07/12
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2022, 卷号: 20, 期号: 3, 页码: 446-454
作者:  Xu, Feng;  Wang, Yifan;  Ling, Yunchao;  Zhou, Chenfen;  Wang, Haizhou;  Teschendorff, Andrew E.;  Zhao, Yi;  Zhao, Haitao;  He, Yungang;  Zhang, Guoqing;  Yang, Zhen
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
MicroRNA  Cancer  Differential expression  Model organism  Database  
piRBase: integrating piRNA annotation in all aspects 期刊论文
NUCLEIC ACIDS RESEARCH, 2022, 卷号: 50, 期号: D1, 页码: D265-D272
作者:  Wang, Jiajia;  Shi, Yirong;  Zhou, Honghong;  Zhang, Peng;  Song, Tingrui;  Ying, Zhiye;  Yu, Haopeng;  Li, Yanyan;  Zhao, Yi;  Zeng, Xiaoxi;  He, Shunmin;  Chen, Runsheng
收藏  |  浏览/下载：21/0  |  提交时间：2022/12/07
Systematic Survey of the Alteration of the Faecal Microbiota in Rats With Gastrointestinal Disorder and Modulation by Multicomponent Drugs 期刊论文
FRONTIERS IN PHARMACOLOGY, 2021, 卷号: 12, 页码: 13
作者:  Wu, Yue;  Wu, Yang;  Wu, Hongwei;  Wu, Changxun;  Ji, Enhui;  Xu, Jing;  Zhang, Yi;  Wei, Junying;  Zhao, Yi;  Yang, Hongjun
收藏  |  浏览/下载：28/0  |  提交时间：2022/06/21
XEFP  functional dyspepsia  intestinal flora  metabonomics  network pharmacology  
High Throughput Transcriptome Data Analysis and Computational Verification Reveal Immunotherapy Biomarkers of Compound Kushen Injection for Treating Triple-Negative Breast Cancer 期刊论文
FRONTIERS IN ONCOLOGY, 2021, 卷号: 11, 页码: 23
作者:  Liu, Xinkui;  Wu, Yang;  Zhang, Yingying;  Bu, Dechao;  Wu, Chao;  Lu, Shan;  Huang, Zhihong;  Song, Yurong;  Zhao, Yi;  Guo, Fengying;  Ye, Peizhi;  Fu, Changgeng;  Shen, Liangliang;  Zhang, Jingyuan;  Wang, Haojia;  Duan, Xianchun;  Wu, Jiarui
收藏  |  浏览/下载：29/0  |  提交时间：2022/06/21
compound kushen injection  triple-negative breast cancer  RNA sequencing  tumor microenvironment  prognostic signature  
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs 期刊论文
NUCLEIC ACIDS RESEARCH, 2021, 卷号: 49, 期号: W1, 页码: W459-W468
作者:  Zhang, Yuwei;  Bu, Dechao;  Huo, Peipei;  Wang, Zhihao;  Rong, Hao;  Li, Yanguo;  Liu, Jingjia;  Ye, Meng;  Wu, Yang;  Jiang, Zheng;  Liao, Qi;  Zhao, Yi
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01