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Validation Methods of Peptide Identification Results in Proteomics br 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
Confident software-driven identification of intact glycopeptides by integrating complementary peptide- and glycan-first search strategies in efficient mining of MS2 data 期刊论文
GLYCOBIOLOGY, 2021, 卷号: 31, 期号: 12, 页码: 1725-1726
作者:  Chien, Yu-Chun;  Kuo, Chu-Wei;  Zeng, Wen-Feng;  Khoo, Kay-Hooi
收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582
作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01
cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning  
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：247/0  |  提交时间：2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate  
pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD-and CID-MS/MS and MS3 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 10
作者:  Zeng, Wen-Feng;  Liu, Ming-Qi;  Zhang, Yang;  Wu, Jian-Qiang;  Fang, Pan;  Peng, Chao;  Nie, Aiying;  Yan, Guoquan;  Cao, Weiqian;  Liu, Chao;  Chi, Hao;  Sun, Rui-Xiang;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Pengyuan
收藏  |  浏览/下载：70/0  |  提交时间：2019/12/13