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Synergistic optimization of Liquid Chromatography and Mass Spectrometry parameters on Orbitrap Tribrid mass spectrometer for high efficient data-dependent proteomics 期刊论文
JOURNAL OF MASS SPECTROMETRY, 2020, 页码: 10
作者:  Huang, Peiwu;  Liu, Chao;  Gao, Weina;  Chu, Bizhu;  Cai, Zongwei;  Tian, Ruijun
收藏  |  浏览/下载：62/0  |  提交时间：2020/12/10
chromatography  data-dependent acquisition  label-free proteomics  mass spectrometry  precursor determination algorithm  
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12
作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2018, 卷号: 17, 期号: 1, 页码: 119-128
作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Liu, Chao;  Wang, Rui-Min;  Wang, Zhao-Wei;  Niu, Xiu-Nan;  Chen, Zhen-Lin;  He, Si-Min
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
tandem mass spectrometry  de novo peptide sequencing  modification site localization  phosphorylation  
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning 期刊论文
ANALYTICAL CHEMISTRY, 2017, 卷号: 89, 期号: 23, 页码: 12690-12697
作者:  Zhou, Xie-Xuan;  Zeng, Wen-Feng;  Chi, Hao;  Luo, Chunjie;  Liu, Chao;  Zhan, Jianfeng;  He, Si-Min;  Zhang, Zhifei
收藏  |  浏览/下载：67/0  |  提交时间：2019/12/10
pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification 期刊论文
NATURE COMMUNICATIONS, 2017, 卷号: 8, 页码: 14
作者:  Liu, Ming-Qi;  Zeng, Wen-Feng;  Fang, Pan;  Cao, Wei-Qian;  Liu, Chao;  Yan, Guo-Quan;  Zhang, Yang;  Peng, Chao;  Wu, Jian-Qiang;  Zhang, Xiao-Jin;  Tu, Hui-Jun;  Chi, Hao;  Sun, Rui-Xiang;  Cao, Yong;  Dong, Meng-Qiu;  Jiang, Bi-Yun;  Huang, Jiang-Ming;  Shen, Hua-Li;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Peng-Yuan
收藏  |  浏览/下载：79/0  |  提交时间：2019/12/12
Immunopurification and Mass Spectrometry Identifies Protein Phosphatase 2A (PP2A) and BIN2/GSK3 as Regulators of AKS Transcription Factors in Arabidopsis 期刊论文
MOLECULAR PLANT, 2017, 卷号: 10, 期号: 2, 页码: 345-348
作者:  Bu, Shuo-Lei;  Liu, Chao;  Liu, Ning;  Zhao, Ji-Long;  Ai, Lian-Feng;  Chi, Hao;  Li, Kathy L.;  Chien, Chih-Wei;  Burlingame, Alma L.;  Zhang, Sheng-Wei;  Wang, Zhi-Yong
收藏  |  浏览/下载：65/0  |  提交时间：2019/12/12
Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2017, 卷号: 16, 期号: 2, 页码: 645-654
作者:  Yang, Hao;  Chi, Hao;  Zhou, Wen-Jing;  Zeng, Wen-Feng;  He, Kun;  Liu, Chao;  Sun, Rui-Xiang;  He, Si-Min
收藏  |  浏览/下载：50/0  |  提交时间：2019/12/12
tandem mass spectrometry  de novo peptide sequencing  dynamic programming  unexpected modifications  
Modeling Protein Excited-state Structures from "Over-length" Chemical Cross-links 期刊论文
JOURNAL OF BIOLOGICAL CHEMISTRY, 2017, 卷号: 292, 期号: 4, 页码: 1187-1196
作者:  Ding, Yue-He;  Gong, Zhou;  Dong, Xu;  Liu, Kan;  Liu, Zhu;  Liu, Chao;  He, Si-Min;  Dong, Meng-Qiu;  Tang, Chun
收藏  |  浏览/下载：57/0  |  提交时间：2019/12/12
pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD-and CID-MS/MS and MS3 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 10
作者:  Zeng, Wen-Feng;  Liu, Ming-Qi;  Zhang, Yang;  Wu, Jian-Qiang;  Fang, Pan;  Peng, Chao;  Nie, Aiying;  Yan, Guoquan;  Cao, Weiqian;  Liu, Chao;  Chi, Hao;  Sun, Rui-Xiang;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Pengyuan
收藏  |  浏览/下载：70/0  |  提交时间：2019/12/13
pTop 1.0: A High-Accuracy and High-Efficiency Search Engine for Intact Protein Identification 期刊论文
ANALYTICAL CHEMISTRY, 2016, 卷号: 88, 期号: 6, 页码: 3082-3090
作者:  Sun, Rui-Xiang;  Luo, Lan;  Wu, Long;  Wang, Rui-Min;  Zeng, Wen-Feng;  Chi, Hao;  Liu, Chao;  He, Si-Min
收藏  |  浏览/下载：57/0  |  提交时间：2019/12/13