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Validation Methods of Peptide Identification Results in Proteomics br 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
A universal database reduction method based on the sequence tag strategy to facilitate large-scale database search in proteomics 期刊论文
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2023, 卷号: 483, 页码: 11
作者:  Wang, Kai-Fei;  Wu, Yu-Zhuo;  Chi, Hao
收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文
JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9
作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao
收藏  |  浏览/下载：31/0  |  提交时间：2022/06/21
Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning  
pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582
作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01
cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning  
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition 期刊论文
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2019, 卷号: 30, 期号: 8, 页码: 1396-1405
作者:  Li, Wenxue;  Chi, Hao;  Salovska, Barbora;  Wu, Chongde;  Sun, Liangliang;  Rosenberger, George;  Liu, Yansheng
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
Data-independent acquisition  Isolation windows  Maxquant  pFind  Spectronaut  
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：247/0  |  提交时间：2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate  
pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD-and CID-MS/MS and MS3 期刊论文
SCIENTIFIC REPORTS, 2016, 卷号: 6, 页码: 10
作者:  Zeng, Wen-Feng;  Liu, Ming-Qi;  Zhang, Yang;  Wu, Jian-Qiang;  Fang, Pan;  Peng, Chao;  Nie, Aiying;  Yan, Guoquan;  Cao, Weiqian;  Liu, Chao;  Chi, Hao;  Sun, Rui-Xiang;  Wong, Catherine C. L.;  He, Si-Min;  Yang, Pengyuan
收藏  |  浏览/下载：70/0  |  提交时间：2019/12/13
Improved Peptide Identification for Proteomic Analysis Based on Comprehensive Characterization of Electron Transfer Dissociation Spectra 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2010, 卷号: 9, 期号: 12, 页码: 6354-6367
作者:  Sun, Rui-Xiang;  Dong, Meng-Qiu;  Song, Chun-Qing;  Chi, Hao;  Yang, Bing;  Xiu, Li-Yun;  Tao, Li;  Jing, Ziu-Yi;  Liu, Chao;  Wang, Le-Heng;  Fu, Yan;  He, Si-Min
收藏  |  浏览/下载：61/0  |  提交时间：2019/12/16
ETD  hydrogen rearrangement  peptide sequencing  search engine  
Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate 期刊论文
BIOINFORMATICS, 2010, 卷号: 26, 期号: 12, 页码: i399-i406
作者:  Ye, Ding;  Fu, Yan;  Sun, Rui-Xiang;  Wang, Hai-Peng;  Yuan, Zuo-Fei;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：53/0  |  提交时间：2019/12/16
An efficient parallelization of phosphorylated peptide and protein identification 期刊论文
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2010, 卷号: 24, 期号: 12, 页码: 1791-1798
作者:  Wang, Leheng;  Wang, Wenping;  Chi, Hao;  Wu, Yanjie;  Li, You;  Fu, Yan;  Zhou, Chen;  Sun, Ruixiang;  Wang, Haipeng;  Liu, Chao;  Yuan, Zuofei;  Xiu, Liyun;  He, Si-Min
收藏  |  浏览/下载：53/0  |  提交时间：2019/12/16