中国科学院计算技术研究所机构知识库

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限定条件	作者：Chi, Hao    第一作者

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	Validation Methods of Peptide Identification Results in Proteomics br 期刊论文 PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125 作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04 proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods
	A universal database reduction method based on the sequence tag strategy to facilitate large-scale database search in proteomics 期刊论文 INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2023, 卷号: 483, 页码: 11 作者:  Wang, Kai-Fei;  Wu, Yu-Zhuo;  Chi, Hao 收藏  |  浏览/下载：13/0  |  提交时间：2023/07/12
	pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文 JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9 作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao 收藏  |  浏览/下载：31/0  |  提交时间：2022/06/21 Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning
	pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2021, 卷号: 20, 期号: 5, 页码: 2570-2582 作者:  Chen, Zhen-Lin;  Mao, Peng-Zhi;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min 收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01 cross-linking mass spectrometry  spectrum prediction  deep learning  transfer learning  online fine-tuning
	Open-pFind Verified Four Missing Proteins from Multi-Tissues 期刊论文 JOURNAL OF PROTEOME RESEARCH, 2020, 卷号: 19, 期号: 12, 页码: 4808-4814 作者:  Wu, Shujia;  Sun, Jinshuai;  Wang, Xi;  Xu, Feng;  Chi, Hao;  Li, Yanchang;  Zhong, Bowen;  Xie, Yuping;  Yan, Zhonghua;  Chang, Lei;  Wang, Dongxue;  He, Fuchu;  Wu, Junzhu;  Zhang, Yao;  Xu, Ping 收藏  |  浏览/下载：39/0  |  提交时间：2021/12/01 Chromosome-Centric Human Proteome Project  missing proteins  open-pFind  multiple tissues
	GameTag: A New Sequence Tag Generation Algorithm Based on Cooperative Game Theory 期刊论文 PROTEOMICS, 2020, 页码: 9 作者:  Fei, Zhengcong;  Wang, Kaifei;  Chi, Hao 收藏  |  浏览/下载：52/0  |  提交时间：2020/12/10 cooperative game  deep learning  proteomics  sequence tag generation
	MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文 ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731 作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min 收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10
	Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition 期刊论文 JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2019, 卷号: 30, 期号: 8, 页码: 1396-1405 作者:  Li, Wenxue;  Chi, Hao;  Salovska, Barbora;  Wu, Chongde;  Sun, Liangliang;  Rosenberger, George;  Liu, Yansheng 收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10 Data-independent acquisition  Isolation windows  Maxquant  pFind  Spectronaut
	A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文 NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12 作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min 收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
	pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文 BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190 作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min 收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10