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MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731
作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min
收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition 期刊论文
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2019, 卷号: 30, 期号: 8, 页码: 1396-1405
作者:  Li, Wenxue;  Chi, Hao;  Salovska, Barbora;  Wu, Chongde;  Sun, Liangliang;  Rosenberger, George;  Liu, Yansheng
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
Data-independent acquisition  Isolation windows  Maxquant  pFind  Spectronaut  
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 期刊论文
NATURE COMMUNICATIONS, 2019, 卷号: 10, 页码: 12
作者:  Chen, Zhen-Lin;  Meng, Jia-Ming;  Cao, Yong;  Yin, Ji-Li;  Fang, Run-Qian;  Fan, Sheng-Bo;  Liu, Chao;  Zeng, Wen-Feng;  Ding, Yue-He;  Tan, Dan;  Wu, Long;  Zhou, Wen-Jing;  Chi, Hao;  Sun, Rui-Xiang;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载：91/0  |  提交时间：2019/12/10
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190
作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：247/0  |  提交时间：2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate