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Validation Methods of Peptide Identification Results in Proteomics br 期刊论文
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2023, 卷号: 50, 期号: 1, 页码: 109-125
作者:  Zhou, Wen-Jing;  Zeng, Wen-Feng;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：23/0  |  提交时间：2023/12/04
proteomics  mass spectrometry  target-decoy approach  false discovery rate  validation methods  
pValid 2: A deep learning based validation method for peptide identification in shotgun proteomics with increased discriminating power 期刊论文
JOURNAL OF PROTEOMICS, 2022, 卷号: 251, 页码: 9
作者:  Zhou, Wen-Jing;  Wei, Zhuo-Hong;  He, Si-Min;  Chi, Hao
收藏  |  浏览/下载：31/0  |  提交时间：2022/06/21
Proteomics  Tandem mass spectrometry  Retention time  Validation method  Deep learning  
MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning 期刊论文
ANALYTICAL CHEMISTRY, 2019, 卷号: 91, 期号: 15, 页码: 9724-9731
作者:  Zeng, Wen-Feng;  Zhou, Xie-Xuan;  Zhou, Wen-Jing;  Chi, Hao;  Zhan, Jianfeng;  He, Si-Min
收藏  |  浏览/下载：77/0  |  提交时间：2019/12/10
pNovo 3: precise de novo peptide sequencing using a learning-to-rank framework 期刊论文
BIOINFORMATICS, 2019, 卷号: 35, 期号: 14, 页码: I183-I190
作者:  Yang, Hao;  Chi, Hao;  Zeng, Wen-Feng;  Zhou, Wen-Jing;  He, Si-Min
收藏  |  浏览/下载：71/0  |  提交时间：2019/12/10
pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载：247/0  |  提交时间：2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate  
Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics 期刊论文
MOLECULAR & CELLULAR PROTEOMICS, 2019, 卷号: 18, 期号: 4, 页码: 773-785
作者:  Yang, Hao;  Li, Yan-Chang;  Zhao, Ming-Zhi;  Wu, Fei-Lin;  Wang, Xi;  Xiao, Wei-Di;  Wang, Yi-Hao;  Zhang, Jun-Ling;  Wang, Fu-Qiang;  Xu, Feng;  Zengt, Wen-Feng;  Overall, Christopher M.;  He, Si-Min;  Chi, Hao;  Xu, Ping
收藏  |  浏览/下载：278/0  |  提交时间：2019/08/16
pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning 期刊论文
ANALYTICAL CHEMISTRY, 2017, 卷号: 89, 期号: 23, 页码: 12690-12697
作者:  Zhou, Xie-Xuan;  Zeng, Wen-Feng;  Chi, Hao;  Luo, Chunjie;  Liu, Chao;  Zhan, Jianfeng;  He, Si-Min;  Zhang, Zhifei
收藏  |  浏览/下载：68/0  |  提交时间：2019/12/10
pTop 1.0: A High-Accuracy and High-Efficiency Search Engine for Intact Protein Identification 期刊论文
ANALYTICAL CHEMISTRY, 2016, 卷号: 88, 期号: 6, 页码: 3082-3090
作者:  Sun, Rui-Xiang;  Luo, Lan;  Wu, Long;  Wang, Rui-Min;  Zeng, Wen-Feng;  Chi, Hao;  Liu, Chao;  He, Si-Min
收藏  |  浏览/下载：57/0  |  提交时间：2019/12/13
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data (Reprinted from vol 125, pg 89-97, 2015) 期刊论文
JOURNAL OF PROTEOMICS, 2015, 卷号: 129, 页码: 33-41
作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载：54/0  |  提交时间：2019/12/13
Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS  
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data 期刊论文
JOURNAL OF PROTEOMICS, 2015, 卷号: 125, 页码: 89-97
作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载：60/0  |  提交时间：2019/12/13
Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS