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Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:18/0  |  提交时间:2022/12/07
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo
收藏  |  浏览/下载:18/0  |  提交时间:2022/12/07
deep learning and protein threading  protein alignment  protein structure prediction  
TagDict: Prediction of Theoretical Spectra of Peptides Based on A Tag Dictionary 期刊论文
CURRENT BIOINFORMATICS, 2018, 卷号: 13, 期号: 5, 页码: 444-449
作者:  Wang, Yaojun;  Zhang, Jingwei;  Bu, Dongbo;  Sun, Shiwei
收藏  |  浏览/下载:66/0  |  提交时间:2019/12/10
Mass spectrometry  theoretical spectrum prediction  database search  peptide identification  TagDict  MassAnalyzer  
Improving prediction of burial state of residues by exploiting correlation among residues 期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 11
作者:  Gong, Hai'e;  Zhang, Haicang;  Zhu, Jianwei;  Wang, Chao;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/12
Protein structure  Burial states of residue  Conditional random field  Residue correlation  
LEX-SVM: EXPLORING THE POTENTIAL OF EXON EXPRESSION PROFILING FOR DISEASE CLASSIFICATION 期刊论文
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2011, 卷号: 9, 期号: 2, 页码: 299-316
作者:  Yuan, Xiongying;  Zhao, Yi;  Liu, Changning;  Bu, Dongbo
收藏  |  浏览/下载:71/0  |  提交时间:2019/12/16
Alternative splicing  Affymetrix exon array  RNA-Seq  exon expression profile classification  regularized SVM