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Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925
作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:2/0  |  提交时间:2024/05/20
Protein folding  Protein structure prediction  Deep learning  Transformer  Language model  
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo
收藏  |  浏览/下载:18/0  |  提交时间:2022/12/07
deep learning and protein threading  protein alignment  protein structure prediction  
HepParser: An Intelligent Software Program for Deciphering Low-Molecular-Weight Heparin Based on Mass Spectrometry 期刊论文
FRONTIERS IN CHEMISTRY, 2021, 卷号: 9, 页码: 13
作者:  Wang, Hui;  Wang, Yu;  Hou, Meijie;  Zhang, Chunming;  Wang, Yaojun;  Guo, Zhendong;  Bu, Dongbo;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载:35/0  |  提交时间:2021/12/01
LMWHs  mass spectrometry  glycosaminoglycans  isotopic distribution  computational method  
Improving consensus contact prediction via server correlation reduction 期刊论文
BMC STRUCTURAL BIOLOGY, 2009, 卷号: 9, 页码: 14
作者:  Gao, Xin;  Bu, Dongbo;  Xu, Jinbo;  Li, Ming
收藏  |  浏览/下载:38/0  |  提交时间:2019/12/16
Fragment-HMM: A new approach to protein structure prediction 期刊论文
PROTEIN SCIENCE, 2008, 卷号: 17, 期号: 11, 页码: 1925-1934
作者:  Li, Shuai Cheng;  Bu, Dongbo;  Xu, Jinbo;  Li, Ming
收藏  |  浏览/下载:42/0  |  提交时间:2019/12/16
protein structure prediction  hidden Markov model  fragment assembly