Grid-based data access to nucleotide sequence database

	Grid-based data access to nucleotide sequence database
	Wang, Frank Zhigang ; Wu, Sining ; Helian, Na ; Xu, Zhiwei ; Deng, Yuhui ; Khare, Vineet ; Liao, Chenhan ; Thompson, Chris ; Parker, Micliael
	2007
发表期刊	NEW GENERATION COMPUTING
ISSN	0288-3635
卷号	25 期号:4 页码:409-424
摘要	The International Nucleotide Sequence Database Collaboration (INSDC) exchanges sequence data on a daily basis across its three member organizations in the USA, UK and Japan. This paper studies how this sequence database in MySQL can best take advantage of the increased transfer bandwidth of a Grid-optimized data communication protocol. Within the context of the UK Government Project Grid-oriented Storage (GOS) and the EC Project EuroAsiaGrid, COS File System (GOS-FS) has been developed in our lab, which melds distributed file system technology with high performance data transfer techniques to meet the needs of WAN/Grid-based virtual organizations. A real-world test shows that the INSDC sequence database backing up operation, mysqldump, over the GOS-FS protocol beats those over the classic NFS protocol by 6 times over the link between Cambridge and Tokyo. Best of all, the multi-streamed GOS-FS protocol remains fully compatible with existing IP infrastructures.
关键词	nucleotide sequence database grid computing life science grid-based data access MySQL
收录类别	SCI
语种	英语
WOS研究方向	Computer Science
WOS类目	Computer Science, Hardware & Architecture ; Computer Science, Theory & Methods
WOS记录号	WOS:000249675300006
出版者	SPRINGER
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/10841
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Wang, Frank Zhigang
作者单位	1.Ctr Gird Comp, Cambridge Cranfield High Perform Comp Facility, Cranfield MK43 0AL, Beds, England 2.Chinese Acad Sci, Comp Technol Inst, Beijing 100864, Peoples R China 3.Cambridge Cranfield High Perform Comp Facility, Cranfield MK43 0AL, Beds, England 4.Univ Cambridge, Cambridge e Sci Ctr, Cavendish Lab, Cambridge CB3 OHE, England
推荐引用方式 GB/T 7714	Wang, Frank Zhigang,Wu, Sining,Helian, Na,et al. Grid-based data access to nucleotide sequence database[J]. NEW GENERATION COMPUTING,2007,25(4):409-424.
APA	Wang, Frank Zhigang.,Wu, Sining.,Helian, Na.,Xu, Zhiwei.,Deng, Yuhui.,...&Parker, Micliael.(2007).Grid-based data access to nucleotide sequence database.NEW GENERATION COMPUTING,25(4),409-424.
MLA	Wang, Frank Zhigang,et al."Grid-based data access to nucleotide sequence database".NEW GENERATION COMPUTING 25.4(2007):409-424.