中国科学院计算技术研究所机构知识库

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限定条件	作者：Bu, Dongbo    第一作者    作者：Sun, Shiwei

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	SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488 作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo 收藏  |  浏览/下载：6/0  |  提交时间：2024/05/20 Deep learning  protein structure prediction
	ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文 JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo 收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07 deep learning and protein threading  protein alignment  protein structure prediction
	FALCON2: a web server for high-quality prediction of protein tertiary structures 期刊论文 BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zhang, Haicang;  Sun, Shiwei;  Bu, Dongbo 收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01 Protein structure prediction  Template-based modeling  Ab initio prediction  Protein structure prediction web service
	Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文 BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11 作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：46/0  |  提交时间：2020/12/10 Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization
	Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling 期刊论文 BMC BIOINFORMATICS, 2019, 卷号: 20, 页码: 10 作者:  Wang, Chao;  Wei, Yi;  Zhang, Haicang;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：80/0  |  提交时间：2019/08/16 Protein structure prediction  Energy function  Attraction-basin  Reverse Monte Carlo sampling  Monte Carlo search  Linear program
	TagDict: Prediction of Theoretical Spectra of Peptides Based on A Tag Dictionary 期刊论文 CURRENT BIOINFORMATICS, 2018, 卷号: 13, 期号: 5, 页码: 444-449 作者:  Wang, Yaojun;  Zhang, Jingwei;  Bu, Dongbo;  Sun, Shiwei 收藏  |  浏览/下载：66/0  |  提交时间：2019/12/10 Mass spectrometry  theoretical spectrum prediction  database search  peptide identification  TagDict  MassAnalyzer