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Equivariance is essential, local representation is a need: A comprehensive and critical study of machine learning potentials for tobermorite phases 期刊论文
COMPUTATIONAL MATERIALS SCIENCE, 2025, 卷号: 246, 页码: 14
作者:  Zhu, Keming;  Zhang, Zhibin
收藏  |  浏览/下载:3/0  |  提交时间:2024/12/06
Machine learning potential  Tobermorite  Density functional theory  Molecular dynamics  
An Integrated Deep Learning and Molecular Dynamics Simulation-Based Screening Pipeline Identifies Inhibitors of a New Cancer Drug Target TIPE2 期刊论文
FRONTIERS IN PHARMACOLOGY, 2021, 卷号: 12, 页码: 13
作者:  Zhang, Haiping;  Li, Junxin;  Saravanan, Konda Mani;  Wu, Hao;  Wang, Zhichao;  Wu, Du;  Wei, Yanjie;  Lu, Zhen;  Chen, Youhai H.;  Wan, Xiaochun;  Pan, Yi
收藏  |  浏览/下载:38/0  |  提交时间:2022/06/21
TIPE2  UM-164  virtual screening  deep learning  molecular dynamics simulation  
Long-term behavior of vacancy defects in Pu-Ga alloy: Effects of temperature and Ga concentration 期刊论文
COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2021, 卷号: 1204, 页码: 10
作者:  Xu, Lei;  Wang, Li-Fang;  Chen, Xin;  Gao, Xing-Yu;  Shang, Hong-Hui;  Liu, Hai-Feng;  Song, Hai-Feng
收藏  |  浏览/下载:46/0  |  提交时间:2021/12/01
Vacancy defects  Dynamical evolution  Pu-Ga alloy  Actinide metals  Atomistic kinetic Monte Carlo  Molecular dynamics  
Structural basis for the inhibition of SARS-CoV2 main protease by Indian medicinal plant-derived antiviral compounds 期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2020, 页码: 9
作者:  Saravanan, Konda Mani;  Zhang, Haiping;  Senthil, Renganathan;  Vijayakumar, Kevin Kumar;  Sounderrajan, Vignesh;  Wei, Yanjie;  Shakila, Harshavardhan
收藏  |  浏览/下载:105/0  |  提交时间:2020/12/10
SARS-CoV2  main protease  medicinal plants  molecular docking and dynamics  drug design  
FastNBL: fast neighbor lists establishment for molecular dynamics simulation based on bitwise operations 期刊论文
JOURNAL OF SUPERCOMPUTING, 2020, 卷号: 76, 期号: 7, 页码: 5501-5520
作者:  Li, Kun;  Li, Shigang;  Huang, Shan;  Chen, Yifeng;  Zhang, Yunquan
收藏  |  浏览/下载:58/0  |  提交时间:2020/12/10
Neighbor list  Bitwise operations  SIMD  Molecular dynamics  
Kernel optimization for short-range molecular dynamics 期刊论文
COMPUTER PHYSICS COMMUNICATIONS, 2017, 卷号: 211, 页码: 31-40
作者:  Hu Changjun;  Wang Xianmeng;  Li Jianjiang;  He Xinfu;  Li Shigang;  Feng Yangde;  Yang Shaofeng;  Bai He
收藏  |  浏览/下载:63/0  |  提交时间:2019/12/12
Molecular Dynamics  OpenMP  SIMD  MIC