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ExomiRHub: A comprehensive database for hosting and analyzing human disease-related extracellular microRNA transcriptomics data 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2024, 卷号: 23, 页码: 3104-3116
作者:  Liu, Yang;  Min, Zhuochao;  Mo, Jing;  Ju, Zhen;  Chen, Jianliang;  Liang, Weiling;  Zhang, Lantian;  Li, Hanguang;  Chan, Godfrey Chi-Fung;  Wei, Yanjie;  Zhang, Wenliang
收藏  |  浏览/下载：1/0  |  提交时间：2024/12/06
MiRNA  Extracellular vesicle  Exosome  Cancer  Liquid biopsy  
Attention-Guided Residual U-Net with SE Connection and ASPP for Watershed-Based Cell Segmentation in Microscopy Images 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2024, 页码: 13
作者:  Niyogisubizo, Jovial;  Zhao, Keliang;  Meng, Jintao;  Pan, Yi;  Didi, Rosiy Adi;  Wei, Yanjie
收藏  |  浏览/下载：2/0  |  提交时间：2024/12/06
cell segmentation  deep learning  watershed segmentation  bright-field microscopy  iPS cell reprogramming  attention mechanism  
A new paradigm for applying deep learning to protein-ligand interaction prediction 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 25, 期号: 3, 页码: 12
作者:  Wang, Zechen;  Wang, Sheng;  Li, Yangyang;  Guo, Jingjing;  Wei, Yanjie;  Mu, Yuguang;  Zheng, Liangzhen;  Li, Weifeng
收藏  |  浏览/下载：2/0  |  提交时间：2024/12/06
protein-ligand interaction  scoring function  deep learning  graph neural network  
JCcirc: circRNA full-length sequence assembly through integrated junction contigs 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2023, 卷号: 24, 期号: 6, 页码: 11
作者:  Zhang, Jingjing;  Zhang, Huiling;  Ju, Zhen;  Peng, Yin;  Pan, Yi;  Xi, Wenhui;  Wei, Yanjie
收藏  |  浏览/下载：12/0  |  提交时间：2024/05/20
circRNA  full-length sequence  transcriptome  junction contig  
Identification of Key Genes as Potential Drug Targets for Gastric Cancer 期刊论文
TSINGHUA SCIENCE AND TECHNOLOGY, 2023, 卷号: 28, 期号: 4, 页码: 649-664
作者:  Hossain, Md. Tofazzal;  Reza, Md. Selim;  Peng, Yin;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载：25/0  |  提交时间：2023/07/12
gastric cancer  hub genes  candidate genes  molecular docking  candidate drugs  
Evaluation of CircRNA sequence assembly methods using long reads (vol 13, 816825, 2022) 期刊论文
FRONTIERS IN GENETICS, 2023, 卷号: 14, 页码: 1
作者:  Zhang, Jingjing;  Hossain, Md. Tofazzal;  Liu, Weiguo;  Peng, Yin;  Pan, Yi;  Wei, Yanjie
收藏  |  浏览/下载：18/0  |  提交时间：2023/12/04
circRNA  full-length sequences  short reads  long reads  assembly  
Identification of Autism spectrum disorder based on a novel feature selection method and Variational Autoencoder 期刊论文
COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 卷号: 148, 页码: 11
作者:  Zhang, Fangyu;  Wei, Yanjie;  Liu, Jin;  Wang, Yanlin;  Xi, Wenhui;  Pan, Yi
收藏  |  浏览/下载：23/0  |  提交时间：2023/07/12
ASD  fMRI  Filter feature selection  VAE  ABIDE  Classification  
DeepBindBC: A practical deep learning method for identifying native-like protein-ligand complexes in virtual screening 期刊论文
METHODS, 2022, 卷号: 205, 页码: 247-262
作者:  Zhang, Haiping;  Zhang, Tingting;  Saravanan, Konda Mani;  Liao, Linbu;  Wu, Hao;  Zhang, Haishan;  Zhang, Huiling;  Pan, Yi;  Wu, Xuli;  Wei, Yanjie
收藏  |  浏览/下载：24/0  |  提交时间：2023/07/12
Native like protein-ligand  Drug virtual screening  ResNet  Deep learning  Human pancreatic alpha amylase inhibitor  
Reconstruction of Full-Length circRNA Sequences Using Chimeric Alignment Information 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 12, 页码: 15
作者:  Hossain, Md. Tofazzal;  Zhang, Jingjing;  Reza, Md. Selim;  Peng, Yin;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载：29/0  |  提交时间：2022/12/07
circular RNA  reconstruction of circRNA sequence  full-length sequence  
Evaluation of CircRNA Sequence Assembly Methods Using Long Reads 期刊论文
FRONTIERS IN GENETICS, 2022, 卷号: 13, 页码: 12
作者:  Zhang, Jingjing;  Hossain, Md. Tofazzal;  Liu, Weiguo;  Peng, Yin;  Pan, Yi;  Wei, Yanjie
收藏  |  浏览/下载：27/0  |  提交时间：2022/12/07
circRNA  full-length sequences  short reads  long reads  assembly