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Single-sequence protein structure prediction by integrating protein language models 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 卷号: 121, 期号: 13, 页码: 7
作者:  Jing, Xiaoyang;  Wu, Fandi;  Luo, Xiao;  Xu, Jinbo
收藏  |  浏览/下载:10/0  |  提交时间:2024/05/20
protein structure prediction  protein language model  single-sequence protein structure rediction  antibody structure prediction  single mutation effect  
Improving protein structure prediction using templates and sequence embedding 期刊论文
BIOINFORMATICS, 2023, 卷号: 39, 期号: 1, 页码: 8
作者:  Wu, Fandi;  Jing, Xiaoyang;  Luo, Xiao;  Xu, Jinbo
收藏  |  浏览/下载:15/0  |  提交时间:2023/12/04
ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo
收藏  |  浏览/下载:26/0  |  提交时间:2022/12/07
deep learning and protein threading  protein alignment  protein structure prediction  
Deep template-based protein structure prediction 期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 5, 页码: 18
作者:  Wu, Fandi;  Xu, Jinbo
收藏  |  浏览/下载:38/0  |  提交时间:2021/12/01
Description and Climate Simulation Performance of CAS-ESM Version 2 期刊论文
JOURNAL OF ADVANCES IN MODELING EARTH SYSTEMS, 2020, 卷号: 12, 期号: 12, 页码: 35
作者:  Zhang, He;  Zhang, Minghua;  Jin, Jiangbo;  Fei, Kece;  Ji, Duoying;  Wu, Chenglai;  Zhu, Jiawen;  He, Juanxiong;  Chai, Zhaoyang;  Xie, Jinbo;  Dong, Xiao;  Zhang, Dongling;  Bi, Xunqiang;  Cao, Hang;  Chen, Huansheng;  Chen, Kangjun;  Chen, Xueshun;  Gao, Xin;  Hao, Huiqun;  Jiang, Jinrong;  Kong, Xianghui;  Li, Shigang;  Li, Yangchun;  Lin, Pengfei;  Lin, Zhaohui;  Liu, Hailong;  Liu, Xiaohong;  Shi, Ying;  Song, Mirong;  Wang, Huijun;  Wang, Tianyi;  Wang, Xiaocong;  Wang, Zifa;  Wei, Ying;  Wu, Baodong;  Xie, Zhenghui;  Xu, Yongfu;  Yu, Yongqiang;  Yuan, Liang;  Zeng, Qingcun;  Zeng, Xiaodong;  Zhao, Shuwen;  Zhou, Guangqing;  Zhu, Jiang
收藏  |  浏览/下载:53/0  |  提交时间:2021/12/01
Earth System Model  CAS‐  ESM  model calibration  climate sensitivity  DECK experiments  
Finding compact structural motifs 期刊论文
THEORETICAL COMPUTER SCIENCE, 2009, 卷号: 410, 期号: 30-32, 页码: 2834-2839
作者:  Bu, Dongbo;  Li, Ming;  Li, Shuai Cheng;  Qian, Jianbo;  Xu, Jinbo
收藏  |  浏览/下载:48/0  |  提交时间:2019/12/16
Compact Structural motif  NP-Hardness  Approximation algorithm  
Improving consensus contact prediction via server correlation reduction 期刊论文
BMC STRUCTURAL BIOLOGY, 2009, 卷号: 9, 页码: 14
作者:  Gao, Xin;  Bu, Dongbo;  Xu, Jinbo;  Li, Ming
收藏  |  浏览/下载:44/0  |  提交时间:2019/12/16
Fragment-HMM: A new approach to protein structure prediction 期刊论文
PROTEIN SCIENCE, 2008, 卷号: 17, 期号: 11, 页码: 1925-1934
作者:  Li, Shuai Cheng;  Bu, Dongbo;  Xu, Jinbo;  Li, Ming
收藏  |  浏览/下载:48/0  |  提交时间:2019/12/16
protein structure prediction  hidden Markov model  fragment assembly  
Designing succinct structural alphabets 期刊论文
BIOINFORMATICS, 2008, 卷号: 24, 期号: 13, 页码: I182-I189
作者:  Li, Shuai Cheng;  Bu, Dongbo;  Gao, Xin;  Xu, Jinbo;  Li, Ming
收藏  |  浏览/下载:46/0  |  提交时间:2019/12/16