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GPCR-BSD: a database of binding sites of human G-protein coupled receptors under diverse states 期刊论文
BMC BIOINFORMATICS, 2024, 卷号: 25, 期号: 1, 页码: 16
作者:  Liu, Fan;  Zhou, Han;  Li, Xiaonong;  Zhou, Liangliang;  Yu, Chungong;  Zhang, Haicang;  Bu, Dongbo;  Liang, Xinmiao
收藏  |  浏览/下载：1/0  |  提交时间：2024/12/06
G-protein coupled receptor  State-specific structure  Binding site  Key residue  Database  
Filling gaps of genome scaffolds via probabilistic searching optical maps against assembly graph 期刊论文
BMC Bioinformatics, 2021, 卷号: 22, 期号: 1
作者:  Huang,Bin;  Wei,Guozheng;  Wang,Bing;  Ju,Fusong;  Zhong,Yi;  Shi,Zhuozheng;  Sun,Shiwei;  Bu,Dongbo
收藏  |  浏览/下载：50/0  |  提交时间：2021/12/01
Genome assembly  Gap filling  Scaffolding  Optical maps  Probabilistic search  
FALCON2: a web server for high-quality prediction of protein tertiary structures 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14
作者:  Kong, Lupeng;  Ju, Fusong;  Zhang, Haicang;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：46/0  |  提交时间：2021/12/01
Protein structure prediction  Template-based modeling  Ab initio prediction  Protein structure prediction web service  
Multi-labelled proteins recognition for high-throughput microscopy images using deep convolutional neural networks 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: SUPPL 3, 页码: 14
作者:  Zhang, Enze;  Zhang, Boheng;  Hu, Shaohan;  Zhang, Fa;  Liu, Zhiyong;  Wan, Xiaohua
收藏  |  浏览/下载：47/0  |  提交时间：2021/12/01
Protein pattern recognition  DNNs  Multi-class and multi-label  Label imbalance  High-throughput microscopy images  
Prediction and analysis of multiple protein lysine modified sites based on conditional wasserstein generative adversarial networks 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 17
作者:  Yang, Yingxi;  Wang, Hui;  Li, Wen;  Wang, Xiaobo;  Wei, Shizhao;  Liu, Yulong;  Xu, Yan
收藏  |  浏览/下载：45/0  |  提交时间：2021/12/01
Post-translational modification  Deep learning  Generative adversarial networks  Random forest  
Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 页码: 19
作者:  Li, Lun;  Han, Renmin;  Zhang, Zhaotian;  Guo, Tiande;  Liu, Zhiyong;  Zhang, Fa
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
Electron tomography  Compressed sensing  Matching pursuit  Iterative reconstruction-reprojection  
ISSEC: inferring contacts among protein secondary structure elements using deep object detection 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:  Zhang, Qi;  Zhu, Jianwei;  Ju, Fusong;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：37/0  |  提交时间：2021/12/01
Protein structure  Secondary structure elements  Inter-SSE contacts  
Spark-based parallel calculation of 3D fourier shell correlation for macromolecule structure local resolution estimation 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 页码: 18
作者:  Lue, Yongchun;  Zeng, Xiangrui;  Tian, Xinhui;  Shi, Xiao;  Wang, Hui;  Zheng, Xiaohui;  Liu, Xiaodong;  Zhao, Xiaofang;  Gao, Xin;  Xu, Min
收藏  |  浏览/下载：62/0  |  提交时间：2020/12/10
3D local Fourier shell correlation  3D local resolution map  Key-value data  Spark  3D array partition  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning (vol 20, 537, 2019) 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 5
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：51/0  |  提交时间：2020/12/10
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：53/0  |  提交时间：2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization