中国科学院计算技术研究所机构知识库

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	Single-sequence protein structure prediction by integrating protein language models 期刊论文 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 卷号: 121, 期号: 13, 页码: 7 作者:  Jing, Xiaoyang;  Wu, Fandi;  Luo, Xiao;  Xu, Jinbo 收藏  |  浏览/下载：6/0  |  提交时间：2024/05/20 protein structure prediction  protein language model  single-sequence protein structure rediction  antibody structure prediction  single mutation effect
	Accelerating k-Shape Time Series Clustering Algorithm Using GPU 期刊论文 IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS, 2023, 卷号: 34, 期号: 10, 页码: 2718-2734 作者:  Wang, Xun;  Song, Ruibao;  Xiao, Junmin;  Li, Tong;  Li, Xueqi 收藏  |  浏览/下载：11/0  |  提交时间：2023/12/04 Data space  time series analysis  time series clustering  GPU architecture  k-shape algorithm
	ESA: An efficient sequence alignment algorithm for biological database search on Sunway TaihuLight 期刊论文 PARALLEL COMPUTING, 2023, 卷号: 117, 页码: 11 作者:  Zhang, Hao;  Huang, Zhiyi;  Chen, Yawen;  Liang, Jianguo;  Gao, Xiran 收藏  |  浏览/下载：12/0  |  提交时间：2023/12/04 Hybrid sequence alignment  Biological database search  Sunway TaihuLight  SW26010  Heterogeneous architecture
	Improving protein structure prediction using templates and sequence embedding 期刊论文 BIOINFORMATICS, 2023, 卷号: 39, 期号: 1, 页码: 8 作者:  Wu, Fandi;  Jing, Xiaoyang;  Luo, Xiao;  Xu, Jinbo 收藏  |  浏览/下载：11/0  |  提交时间：2023/12/04
	Reconstruction of Full-Length circRNA Sequences Using Chimeric Alignment Information 期刊论文 INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 12, 页码: 15 作者:  Hossain, Md. Tofazzal;  Zhang, Jingjing;  Reza, Md. Selim;  Peng, Yin;  Feng, Shengzhong;  Wei, Yanjie 收藏  |  浏览/下载：25/0  |  提交时间：2022/12/07 circular RNA  reconstruction of circRNA sequence  full-length sequence
	Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文 BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996 作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：22/0  |  提交时间：2022/12/07
	ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文 JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo 收藏  |  浏览/下载：23/0  |  提交时间：2022/12/07 deep learning and protein threading  protein alignment  protein structure prediction
	CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文 NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9 作者:  Ju, Fusong;  Zhu, Jianwei;  Shao, Bin;  Kong, Lupeng;  Liu, Tie-Yan;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：40/0  |  提交时间：2021/12/01
	Deep template-based protein structure prediction 期刊论文 PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 5, 页码: 18 作者:  Wu, Fandi;  Xu, Jinbo 收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
	PIM-Align: A Processing-in-Memory Architecture for FM-Index Search Algorithm 期刊论文 JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2021, 卷号: 36, 期号: 1, 页码: 56-70 作者:  Li, Xue-Qi;  Tan, Guang-Ming;  Sun, Ning-Hui 收藏  |  浏览/下载：42/0  |  提交时间：2021/12/01 accelerator design  genomic sequence alignment  near-memory computing