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COMTOP: Protein Residue-Residue Contact Prediction through Mixed Integer Linear Optimization 期刊论文
MEMBRANES, 2021, 卷号: 11, 期号: 7, 页码: 21
作者:  Reza, Md Selim;  Zhang, Huiling;  Hossain, Md Tofazzal;  Jin, Langxi;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载:36/0  |  提交时间:2021/12/01
protein residue-residue contact  contact prediction  mixed integer linear programming  machine learning  protein sequence  
ISSEC: inferring contacts among protein secondary structure elements using deep object detection 期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 13
作者:  Zhang, Qi;  Zhu, Jianwei;  Ju, Fusong;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:29/0  |  提交时间:2021/12/01
Protein structure  Secondary structure elements  Inter-SSE contacts  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:45/0  |  提交时间:2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization  
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 23, 页码: 3749-3757
作者:  Zhu, Jianwei;  Zhang, Haicang;  Li, Shuai Cheng;  Wang, Chao;  Kong, Lupeng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:56/0  |  提交时间:2019/12/10
Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix 期刊论文
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2016, 卷号: 472, 期号: 1, 页码: 217-222
作者:  Zhang, Haicang;  Gao, Yujuan;  Deng, Minghua;  Wang, Chao;  Zhu, Jianwei;  Li, Shuai Cheng;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载:61/0  |  提交时间:2019/12/13
Protein contacts prediction  Correlation analysis  Background correlation removal  Low-rank and sparse matrix decomposition  
COMSAT: Residue contact prediction of transmembrane proteins based on support vector machines and mixed integer linear programming 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2016, 卷号: 84, 期号: 3, 页码: 332-348
作者:  Zhang, Huiling;  Huang, Qingsheng;  Bei, Zhendong;  Wei, Yanjie;  Floudas, Christodoulos A.
收藏  |  浏览/下载:40/0  |  提交时间:2019/12/13
protein structure prediction  hybrid framework  machine learning  ab initio prediction  MILP  
无权访问的条目 学位论文
作者:  凌彬
Adobe PDF(3583Kb)  |  收藏  |  浏览/下载:0/0  |  提交时间:2014/06/25
Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming 期刊论文
JOURNAL OF THEORETICAL BIOLOGY, 2011, 卷号: 269, 期号: 1, 页码: 174-180
作者:  Chen, Ruoying;  Zhang, Zhiwang;  Wu, Di;  Zhang, Peng;  Zhang, Xinyang;  Wang, Yong;  Shi, Yong
收藏  |  浏览/下载:67/0  |  提交时间:2019/12/16
Binding free energy  Alanine mutation  Residue's features  Combined model  Predictive performance  
Improving consensus contact prediction via server correlation reduction 期刊论文
BMC STRUCTURAL BIOLOGY, 2009, 卷号: 9, 页码: 14
作者:  Gao, Xin;  Bu, Dongbo;  Xu, Jinbo;  Li, Ming
收藏  |  浏览/下载:38/0  |  提交时间:2019/12/16