中国科学院计算技术研究所机构知识库

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	Single-sequence protein structure prediction by integrating protein language models 期刊论文 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2024, 卷号: 121, 期号: 13, 页码: 7 作者:  Jing, Xiaoyang;  Wu, Fandi;  Luo, Xiao;  Xu, Jinbo 收藏  |  浏览/下载：6/0  |  提交时间：2024/05/20 protein structure prediction  protein language model  single-sequence protein structure rediction  antibody structure prediction  single mutation effect
	SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文 IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488 作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo 收藏  |  浏览/下载：18/0  |  提交时间：2024/05/20 Deep learning  protein structure prediction
	Protein Structure Prediction: Challenges, Advances, and the Shift of Research Paradigms 期刊论文 GENOMICS PROTEOMICS & BIOINFORMATICS, 2023, 卷号: 21, 期号: 5, 页码: 913-925 作者:  Huang, Bin;  Kong, Lupeng;  Wang, Chao;  Ju, Fusong;  Zhang, Qi;  Zhu, Jianwei;  Gong, Tiansu;  Zhang, Haicang;  Yu, Chungong;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：6/0  |  提交时间：2024/05/20 Protein folding  Protein structure prediction  Deep learning  Transformer  Language model
	Improving protein structure prediction using templates and sequence embedding 期刊论文 BIOINFORMATICS, 2023, 卷号: 39, 期号: 1, 页码: 8 作者:  Wu, Fandi;  Jing, Xiaoyang;  Luo, Xiao;  Xu, Jinbo 收藏  |  浏览/下载：11/0  |  提交时间：2023/12/04
	Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文 BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996 作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：22/0  |  提交时间：2022/12/07
	ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs 期刊论文 JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zheng, Wei-mou;  Zhu, Jianwei;  Sun, Shiwei;  Xu, Jinbo;  Bu, Dongbo 收藏  |  浏览/下载：23/0  |  提交时间：2022/12/07 deep learning and protein threading  protein alignment  protein structure prediction
	FALCON2: a web server for high-quality prediction of protein tertiary structures 期刊论文 BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 14 作者:  Kong, Lupeng;  Ju, Fusong;  Zhang, Haicang;  Sun, Shiwei;  Bu, Dongbo 收藏  |  浏览/下载：42/0  |  提交时间：2021/12/01 Protein structure prediction  Template-based modeling  Ab initio prediction  Protein structure prediction web service
	COMTOP: Protein Residue-Residue Contact Prediction through Mixed Integer Linear Optimization 期刊论文 MEMBRANES, 2021, 卷号: 11, 期号: 7, 页码: 21 作者:  Reza, Md Selim;  Zhang, Huiling;  Hossain, Md Tofazzal;  Jin, Langxi;  Feng, Shengzhong;  Wei, Yanjie 收藏  |  浏览/下载：41/0  |  提交时间：2021/12/01 protein residue-residue contact  contact prediction  mixed integer linear programming  machine learning  protein sequence
	CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction 期刊论文 NATURE COMMUNICATIONS, 2021, 卷号: 12, 期号: 1, 页码: 9 作者:  Ju, Fusong;  Zhu, Jianwei;  Shao, Bin;  Kong, Lupeng;  Liu, Tie-Yan;  Zheng, Wei-Mou;  Bu, Dongbo 收藏  |  浏览/下载：40/0  |  提交时间：2021/12/01
	Deep template-based protein structure prediction 期刊论文 PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 5, 页码: 18 作者:  Wu, Fandi;  Xu, Jinbo 收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01