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pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics 期刊论文
JOURNAL OF PROTEOME RESEARCH, 2019, 卷号: 18, 期号: 7, 页码: 2747-2758
作者:  Zhou, Wen-Jing;  Yang, Hao;  Zeng, Wen-Feng;  Zhang, Kun;  Chi, Hao;  He, Si-Min
收藏  |  浏览/下载:247/0  |  提交时间:2019/08/16
tandem mass spectrometry  target-decoy approach  validation methods  false-positive rate  false-negative rate  
A rapid and easy protein N-terminal profiling strategy using (N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl) phosphonium bromide ( TMPP) labeling and StageTip 期刊论文
PROTEOMICS, 2017, 卷号: 17, 期号: 13-14, 页码: 6
作者:  Li, Yanchang;  Wang, Zhiqiang;  Zhou, Wenjing;  Zhang, Kun;  Ma, Jia;  Wu, Feilin;  Ji, Jianguo;  Hong, Xuechuan;  Deng, Zixin;  He, Simin;  Xu, Ping
收藏  |  浏览/下载:70/0  |  提交时间:2019/12/12
Protein N-termini  Proteomics  Spectrum scoring  StageTip  TMPP  
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data (Reprinted from vol 125, pg 89-97, 2015) 期刊论文
JOURNAL OF PROTEOMICS, 2015, 卷号: 129, 页码: 33-41
作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载:53/0  |  提交时间:2019/12/13
Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS  
A note on the false discovery rate of novel peptides in proteogenomics 期刊论文
BIOINFORMATICS, 2015, 卷号: 31, 期号: 20, 页码: 3249-3253
作者:  Zhang, Kun;  Fu, Yan;  Zeng, Wen-Feng;  He, Kun;  Chi, Hao;  Liu, Chao;  Li, Yan-Chang;  Gao, Yuan;  Xu, Ping;  He, Si-Min
收藏  |  浏览/下载:53/0  |  提交时间:2019/12/13
Experimental Validation of Bacillus anthracis A16R Proteogenomics 期刊论文
SCIENTIFIC REPORTS, 2015, 卷号: 5, 页码: 10
作者:  Gao, Zhiqi;  Wang, Zhiqiang;  Zhang, Kun;  Li, Yanchang;  Zhang, Tao;  Wang, Dongshu;  Liu, Xiankai;  Feng, Erling;  Chang, Lei;  Xu, Junjie;  He, Simin;  Xu, Ping;  Zhu, Li;  Wang, Hengliang
收藏  |  浏览/下载:64/0  |  提交时间:2019/12/13
pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data 期刊论文
JOURNAL OF PROTEOMICS, 2015, 卷号: 125, 页码: 89-97
作者:  Chi, Hao;  He, Kun;  Yang, Bing;  Chen, Zhen;  Sun, Rui-Xiang;  Fan, Sheng-Bo;  Zhang, Kun;  Liu, Chao;  Yuan, Zuo-Fei;  Wang, Quan-Hui;  Liu, Si-Qi;  Dong, Meng-Qiu;  He, Si-Min
收藏  |  浏览/下载:60/0  |  提交时间:2019/12/13
Unrestricted database search  Ion index  In-depth interpretation  High resolution MS/MS