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Genomic and transcriptomic profiling indicates the prognosis significance of mutational signature for TMB-high subtype in Chinese patients with gastric cancer 期刊论文
JOURNAL OF ADVANCED RESEARCH, 2023, 卷号: 51, 页码: 121-134
作者:  Cheng, Yanan;  Bu, Dechao;  Zhang, Qiaoling;  Sun, Rebecca;  Lyle, Stephen;  Zhao, Gang;  Dong, Li;  Li, Hui;  Zhao, Yi;  Yu, Jinpu;  Hao, Xishan
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
Gastric cancer  Comprehensive genomic profiling  TMB  Mutational signature  Tumor metabolism  
Identification of circRNA biomarker for gastric cancer through integrated analysis (vol 9, 857320, 2022) 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2023, 卷号: 10, 页码: 2
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：8/0  |  提交时间：2023/12/04
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Reconstruction of Full-Length circRNA Sequences Using Chimeric Alignment Information 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 卷号: 23, 期号: 12, 页码: 15
作者:  Hossain, Md. Tofazzal;  Zhang, Jingjing;  Reza, Md. Selim;  Peng, Yin;  Feng, Shengzhong;  Wei, Yanjie
收藏  |  浏览/下载：19/0  |  提交时间：2022/12/07
circular RNA  reconstruction of circRNA sequence  full-length sequence  
A Novel Attention-Mechanism Based Cox Survival Model by Exploiting Pan-Cancer Empirical Genomic Information 期刊论文
CELLS, 2022, 卷号: 11, 期号: 9, 页码: 18
作者:  Meng, Xiangyu;  Wang, Xun;  Zhang, Xudong;  Zhang, Chaogang;  Zhang, Zhiyuan;  Zhang, Kuijie;  Wang, Shudong
收藏  |  浏览/下载：21/0  |  提交时间：2022/12/07
deep learning  survival analysis  neural networks  Cox regression  cancer prognosis  
Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis 期刊论文
FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 卷号: 9, 页码: 13
作者:  Hossain, Md. Tofazzal;  Li, Song;  Reza, Md. Selim;  Feng, Shengzhong;  Zhang, Xiaojing;  Jin, Zhe;  Wei, Yanjie;  Peng, Yin
收藏  |  浏览/下载：21/0  |  提交时间：2022/12/07
gastric cancer  circular RNA  computational approach  circRNA biomarker  circRNA-miRNA-gene interaction  
Imbalance of TGF-beta 1/BMP-7 pathways induced by M2-polarized macrophages promotes hepatocellular carcinoma aggressiveness 期刊论文
MOLECULAR THERAPY, 2021, 卷号: 29, 期号: 6, 页码: 2067-2087
作者:  Ning, Junya;  Ye, Yingnan;  Bu, Dechao;  Zhao, Gang;  Song, Tianqiang;  Liu, Pengpeng;  Yu, Wenwen;  Wang, Hailong;  Li, Hui;  Ren, Xiubao;  Ying, Guoguang;  Zhao, Yi;  Yu, Jinpu
收藏  |  浏览/下载：40/0  |  提交时间：2021/12/01
Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity 期刊论文
GENOMICS PROTEOMICS & BIOINFORMATICS, 2021, 卷号: 19, 期号: 3, 页码: 377-393
作者:  Luo, Haitao;  Bu, Dechao;  Shao, Lijuan;  Li, Yang;  Sun, Liang;  Wang, Ce;  Wang, Jing;  Yang, Wei;  Yang, Xiaofei;  Dong, Jun;  Zhao, Yi;  Li, Furong
收藏  |  浏览/下载：21/0  |  提交时间：2022/12/07
Long non-coding RNA  Transcriptome assembly  Metacell  Immune regulation  Functional annotation  
CanImmunother: a manually curated database for identification of cancer immunotherapies associating with biomarkers, targets, and clinical effects 期刊论文
ONCOIMMUNOLOGY, 2021, 卷号: 10, 期号: 1, 页码: 12
作者:  Zhang, Wenliang;  Zeng, Binghui;  Lin, Huancai;  Guan, Wen;  Mo, Jing;  Wu, Song;  Wei, Yanjie;  Zhang, Qianshen;  Yu, Dongsheng;  Li, Weizhong;  Chan, Godfrey Chi-Fung
收藏  |  浏览/下载：36/0  |  提交时间：2021/12/01
Cancer immunotherapy  immune checkpoint  database  biomarker  tumor vaccine  
Editorial: Computational Learning Models and Methods Driven by Omics for Precision Medicine 期刊论文
FRONTIERS IN GENETICS, 2020, 卷号: 11, 页码: 4
作者:  Zhu, Lei;  Cai, Hongmin;  Zhang, Fa;  Zou, Quan;  Wei, Yanjie;  Zheng, Huiru
收藏  |  浏览/下载：30/0  |  提交时间：2021/12/01
omics  machine learning  drug  RNA  disease  biomarker  network analysis  deep learning  
A Deep Learning-Based Tumor Classifier Directly Using MS Raw Data 期刊论文
PROTEOMICS, 2020, 页码: 7
作者:  Dong, Hao;  Liu, Yi;  Zeng, Wen-Feng;  Shu, Kunxian;  Zhu, Yunping;  Chang, Cheng
收藏  |  浏览/下载：59/0  |  提交时间：2020/12/10
deep learning  MS data  proteomics  tumor classifier