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SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances 期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 卷号: 20, 期号: 6, 页码: 3482-3488
作者:  Gong, Tiansu;  Ju, Fusong;  Sun, Shiwei;  Bu, Dongbo
收藏  |  浏览/下载：6/0  |  提交时间：2024/05/20
Deep learning  protein structure prediction  
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction 期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:  Ju, Fusong;  Zhu, Jianwei;  Zhang, Qi;  Wei, Guozheng;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：18/0  |  提交时间：2022/12/07
HepParser: An Intelligent Software Program for Deciphering Low-Molecular-Weight Heparin Based on Mass Spectrometry 期刊论文
FRONTIERS IN CHEMISTRY, 2021, 卷号: 9, 页码: 13
作者:  Wang, Hui;  Wang, Yu;  Hou, Meijie;  Zhang, Chunming;  Wang, Yaojun;  Guo, Zhendong;  Bu, Dongbo;  Li, Yan;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：35/0  |  提交时间：2021/12/01
LMWHs  mass spectrometry  glycosaminoglycans  isotopic distribution  computational method  
Predicting protein inter-residue contacts using composite likelihood maximization and deep learning 期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20, 期号: 1, 页码: 11
作者:  Zhang, Haicang;  Zhang, Qi;  Ju, Fusong;  Zhu, Jianwei;  Gao, Yujuan;  Xie, Ziwei;  Deng, Minghua;  Sun, Shiwei;  Zheng, Wei-Mou;  Bu, Dongbo
收藏  |  浏览/下载：45/0  |  提交时间：2020/12/10
Residue-residue contacts prediction  Deep learning  Markov random fields  Composite likelihood maximization  
De novo glycan structural identification from mass spectra using tree merging strategy 期刊论文
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 卷号: 80, 页码: 217-224
作者:  Ju, Fusong;  Zhang, Jingwei;  Bu, Dongbo;  Li, Yan;  Zhou, Jinyu;  Wang, Hui;  Wang, Yaojun;  Huang, Chuncui;  Sun, Shiwei
收藏  |  浏览/下载：269/0  |  提交时间：2019/08/16