Institute of Computing Technology, Chinese Academy IR
| RNAcentral: a comprehensive database of non-coding RNA sequences | |
| Petrov, Anton I.1; Kay, Simon J. E.1; Kalvari, Ioanna1; Howe, Kevin L.1; Gray, Kristian A.1; Bruford, Elspeth A.1; Kersey, Paul J.1; Cochrane, Guy1; Finn, Robert D.1; Bateman, Alex1; Kozomara, Ana2; Griffiths-Jones, Sam2; Frankish, Adam3; Zwieb, Christian W.4; Lau, Britney Y.5; Williams, Kelly P.5; Chan, Patricia P.6; Lowe, Todd M.6; Cannone, Jamie J.7; Gutell, Robin R.7; Machnicka, Magdalena A.8,9,34; Bujnicki, Janusz M.8,9; Yoshihama, Maki10; Kenmochi, Naoya10; Chai, Benli11; Cole, James R.11; Szymanski, Maciej12; Karlowski, Wojciech M.12; Wood, Valerie13,14; Huala, Eva15; Berardini, Tanya Z.15; Zhao, Yi16,17; Chen, Runsheng16,17; Zhu, Weimin18; Paraskevopoulou, Maria D.19,20; Vlachos, Ioannis S.19,20; Hatzigeorgiou, Artemis G.19,20; Ma, Lina21,22; Zhang, Zhang21,22; Puetz, Joern23; Stadler, Peter F.24,25; McDonald, Daniel26; Basu, Siddhartha27; Fey, Petra; Engel, Stacia R.28; Cherry, J. Michael28; Volders, Pieter-Jan29,30; Mestdagh, Pieter29,30; Wower, Jacek31; Clark, Michael32,33; Quek, Xiu Cheng32; Dinger, Marcel E.32 | |
| 2017-01-04 | |
| 发表期刊 | NUCLEIC ACIDS RESEARCH
 |
| ISSN | 0305-1048 |
| 卷号 | 45期号:D1页码:D128-D134 |
| 摘要 | RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/. |
| DOI | 10.1093/nar/gkw1008 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | Biotechnology and Biological Sciences Research Council (BBSRC)[BB/J019232/1] ; Research Councils UK (RCUK) |
| WOS研究方向 | Biochemistry & Molecular Biology |
| WOS类目 | Biochemistry & Molecular Biology |
| WOS记录号 | WOS:000396575500020 |
| 出版者 | OXFORD UNIV PRESS |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://119.78.100.204/handle/2XEOYT63/7473 |
| 专题 | 中国科学院计算技术研究所期刊论文_英文 |
| 通讯作者 | Petrov, Anton I. |
| 作者单位 | 1.EBI, EMBL, Wellcome Trust Genome Campus, Cambridge CB10 1SD, England 2.Univ Manchester, Fac Biol Med & Hlth, Oxford Rd, Manchester M13 9PT, Lancs, England 3.Wellcome Trust Sanger Inst, Wellcome Trust Genome Campus, Hinxton CB10 1HH, Cambs, England 4.Univ Texas Hlth Sci Ctr San Antonio, Dept Biochem, 7703 Floyd Curl Dr, San Antonio, TX 78229 USA 5.Sandia Natl Labs, Livermore, CA 94551 USA 6.Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA 7.Univ Texas Austin, Ctr Computat Biol & Bioinformat, Austin, TX 78712 USA 8.Int Inst Mol & Cell Biol, Lab Bioinformat & Prot Engn, Trojdena 4, PL-02109 Warsaw, Poland 9.Adam Mickiewicz Univ, Inst Mol Biol & Biotechnol, Fac Biol, Umultowska 89, PL-61614 Poznan, Poland 10.Miyazaki Univ, Frontier Sci Res Ctr, Miyazaki, Japan 11.Michigan State Univ, E Lansing, MI 48824 USA 12.Adam Mickiewicz Univ, Dept Computat Biol, Poznan, Poland 13.Univ Cambridge, Cambridge Syst Biol Ctr, Sanger Bldg,80 Tennis Court Rd, Cambridge CB2 1GA, England 14.Univ Cambridge, Dept Biochem, Sanger Bldg,80 Tennis Court Rd, Cambridge CB2 1GA, England 15.Arabidopsis Informat Resource & Phoenix Bioinform, 643 Bair Isl Rd Suite 403, Redwood City, CA 94063 USA 16.Chinese Acad Sci, Inst Comp Technol, Beijing 100190, Peoples R China 17.Chinese Acad Sci, Inst Biophys, Beijing 100101, Peoples R China 18.Natl Ctr Prot Sci, Data Sci, Beijing, Peoples R China 19.Univ Thessaly, Dept Elect & Comp Engn, DIANA Lab, Volos 38221, Greece 20.Hellenic Pasteur Inst, 127 Vasilissis Sofias Ave, Athens 11521, Greece 21.Chinese Acad Sci, Beijing Inst Genom, BIG Data Ctr, Beijing 100101, Peoples R China 22.Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genome Sci & Informat, Beijing 100101, Peoples R China 23.Univ Strasbourg, 15 Rue R Descartes, F-67084 Strasbourg, France 24.Univ Leipzig, Dept Comp Sci, Bioinformat Grp, D-04107 Leipzig, Germany 25.Univ Leipzig, Interdisciplinary Ctr Bioinformat, D-04107 Leipzig, Germany 26.Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA 27.Northwestern Univ, DictyBase, Chicago, IL 60611 USA 28.Stanford Univ, Dept Genet, Stanford, CA 94305 USA 29.Univ Ghent, Ctr Med Genet, Ghent, Belgium 30.Univ Ghent, Canc Res Inst Ghent, Ghent, Belgium 31.Auburn Univ, Dept Anim Sci, Auburn, AL 36849 USA 32.Garvan Inst Med Res, Sydney, NSW 2010, Australia 33.Univ Oxford, Dept Physiol Anat & Genet, MRC Funct Genom Unit, Oxford OX1 3PT, England 34.Univ Warsaw, Fac Math Informat & Mech MIM, Banacha 2, PL-02097 Warsaw, Poland |
| 推荐引用方式 GB/T 7714 | Petrov, Anton I.,Kay, Simon J. E.,Kalvari, Ioanna,et al. RNAcentral: a comprehensive database of non-coding RNA sequences[J]. NUCLEIC ACIDS RESEARCH,2017,45(D1):D128-D134. |
| APA | Petrov, Anton I..,Kay, Simon J. E..,Kalvari, Ioanna.,Howe, Kevin L..,Gray, Kristian A..,...&Dinger, Marcel E..(2017).RNAcentral: a comprehensive database of non-coding RNA sequences.NUCLEIC ACIDS RESEARCH,45(D1),D128-D134. |
| MLA | Petrov, Anton I.,et al."RNAcentral: a comprehensive database of non-coding RNA sequences".NUCLEIC ACIDS RESEARCH 45.D1(2017):D128-D134. |
| 条目包含的文件 | 条目无相关文件。 | |||||
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