Heterogeneous Gene Sequence Alignment System Based on 12-GHz Superconducting Chip

doi:10.1109/TASC.2024.3461236

	Heterogeneous Gene Sequence Alignment System Based on 12-GHz Superconducting Chip
	Yuan, Chenbo 1,2; Qu, Peiyao 2,3; Li, Lingyun 4; Liu, Huanli 4; Liang, Tianhang 1,2; Jiang, ZheLong 1,2; Chen, Gang 1; Tang, Guangming 3
	2024-12-01
发表期刊	IEEE TRANSACTIONS ON APPLIED SUPERCONDUCTIVITY
ISSN	1051-8223
卷号	34 期号:9 页码:7
摘要	Due to power consumption and speed limitations, the development of CMOS-based large-scale integrated circuits has stagnated in the post-Moore era. While superconducting digital integrated circuit is a promising solution due to its low power consumption and latency. However, the lack of large-scale cryogenic storage units prevents most superconducting chips from being deployed in practical applications. To fully utilize the advantages of superconducting chips and successfully apply them in processing large datasets, we propose a novel heterogeneous processor based on CMOS-based circuits and superconducting chips for processing pattern-matching tasks. In our proposed architecture, a novel communication architecture that enables high-speed, reliable communication between 12 GHz superconducting chips and CMOS circuits is proposed. The hardware overhead for high-speed communication in superconducting chips can be minimized by this approach. In addition, the data communication rate of a single channel can reach 12 Gbps. Simultaneously, we present a 12 GHz, large-scale superconducting chip with 6286 Josephson Junctions that can perform 16-bit pattern matching using the SIMIT-Nb03 process. We have successfully applied our proposed heterogeneous processor to the gene sequence alignment. The processor that uses only one superconducting chip has a throughput of 1.5 Gbp/s (billion base pairs per second), whereas a processor with two superconducting chips has 3 Gbp/s.
关键词	Communication architecture keyword matching superconducting digital circuits Communication architecture keyword matching superconducting digital circuits
DOI	10.1109/TASC.2024.3461236
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China[U19A2080] ; CAS Strategic Leading Science and Technology[XDA27040303] ; CAS Strategic Leading Science and Technology[XDB4400000] ; Strategic Priority Research Program of Chinese Academy of Sciences[XDA18000000]
WOS研究方向	Engineering ; Physics
WOS类目	Engineering, Electrical & Electronic ; Physics, Applied
WOS记录号	WOS:001342457300005
出版者	IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC
引用统计
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/39518
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Chen, Gang; Tang, Guangming
作者单位	1.Chinese Acad Sci, Inst Semicond, Semicond Neural Network Intelligent Percept & Comp, Beijing 100045, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100040, Peoples R China 3.Chinese Acad Sci, Inst Comp Technol, State Key Lab Processors, Beijing 100045, Peoples R China 4.Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, Shanghai 200031, Peoples R China
推荐引用方式 GB/T 7714	Yuan, Chenbo,Qu, Peiyao,Li, Lingyun,et al. Heterogeneous Gene Sequence Alignment System Based on 12-GHz Superconducting Chip[J]. IEEE TRANSACTIONS ON APPLIED SUPERCONDUCTIVITY,2024,34(9):7.
APA	Yuan, Chenbo.,Qu, Peiyao.,Li, Lingyun.,Liu, Huanli.,Liang, Tianhang.,...&Tang, Guangming.(2024).Heterogeneous Gene Sequence Alignment System Based on 12-GHz Superconducting Chip.IEEE TRANSACTIONS ON APPLIED SUPERCONDUCTIVITY,34(9),7.
MLA	Yuan, Chenbo,et al."Heterogeneous Gene Sequence Alignment System Based on 12-GHz Superconducting Chip".IEEE TRANSACTIONS ON APPLIED SUPERCONDUCTIVITY 34.9(2024):7.