Trends on Methods for Prediction of Tandem Mass Spectra of Peptides

doi:10.16476/j.pibb.2018.0201

	Trends on Methods for Prediction of Tandem Mass Spectra of Peptides
	Zhou Xie-Xuan 1,3; Ren Rui 1,3; Gao Wan-Ling 1,3; Huang Yun-You 1,3; Zeng Wen-Feng 2,3; Kong De-Fei 1,3; Hao Tian-Shu 1,3; Zhang Zhi-Fei 4; Zhan Jian-Feng 1,3
	2019-02-01
发表期刊	PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS
ISSN	1000-3282
卷号	46 期号:2 页码:169-180
摘要	Tandem mass spectrometry (MS/MS)-based proteomics has become one of the most important tools in bioscience, and researchers now pay much attention to the prediction of MS/MS spectra for protein identification and quantification. With the accumulation of massive high-quality spectrum data and the development of computing technology, quite a few new methods were emerged to solve this problem. These methods can be divided into two catagories: mobile proton model-based methods, such as MassAnalyzer and MS-Simulator; and machine learning-based methods, including traditional machine learning and deep learning, such as PeptideART, MS2PIP, MS2PBPI and pDeep. In this paper, we investigated a wide variety of corresponding methods, and briefly pointed out the deficiencies of existing software tools, and suggested the future work.
关键词	mass spectrometry proteomics mobile proton model machine learning deep learning
DOI	10.16476/j.pibb.2018.0201
收录类别	SCI
语种	英语
资助项目	National Key Research Program of China[2016YFB1000605]
WOS研究方向	Biochemistry & Molecular Biology ; Biophysics
WOS类目	Biochemistry & Molecular Biology ; Biophysics
WOS记录号	WOS:000459641700008
出版者	CHINESE ACAD SCIENCES, INST BIOPHYSICS
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/3421
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Zhang Zhi-Fei; Zhan Jian-Feng
作者单位	1.Chinese Acad Sci, ICT, State Key Lab Comp Architecture, Beijing 100190, Peoples R China 2.Chinese Acad Sci, ICT, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Capital Med Univ, Dept Physiol & Pathophysiol, Beijing 100069, Peoples R China
推荐引用方式 GB/T 7714	Zhou Xie-Xuan,Ren Rui,Gao Wan-Ling,et al. Trends on Methods for Prediction of Tandem Mass Spectra of Peptides[J]. PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS,2019,46(2):169-180.
APA	Zhou Xie-Xuan.,Ren Rui.,Gao Wan-Ling.,Huang Yun-You.,Zeng Wen-Feng.,...&Zhan Jian-Feng.(2019).Trends on Methods for Prediction of Tandem Mass Spectra of Peptides.PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS,46(2),169-180.
MLA	Zhou Xie-Xuan,et al."Trends on Methods for Prediction of Tandem Mass Spectra of Peptides".PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS 46.2(2019):169-180.