Three-dimensional reconstruction using an adaptive simultaneous algebraic reconstruction technique in electron tomography

doi:10.1016/j.jsb.2011.06.002

	Three-dimensional reconstruction using an adaptive simultaneous algebraic reconstruction technique in electron tomography
	Wan, Xiaohua 1,2,4; Zhang, Fa 1,2; Chu, Qi 1,2,4; Zhang, Kai 3,4; Sun, Fei 3; Yuan, Bo 5; Liu, Zhiyong 1,2
	2011-09-01
发表期刊	JOURNAL OF STRUCTURAL BIOLOGY
ISSN	1047-8477
卷号	175 期号:3 页码:277-287
摘要	Three-dimensional (3D) reconstruction of electron tomography (ET) has emerged as an important technique in analyzing structures of complex biological samples. However most of existing reconstruction methods are not suitable for extremely noisy and incomplete data conditions. We present an adaptive simultaneous algebraic reconstruction technique (ASART) in which a modified multilevel access scheme and an adaptive relaxation parameter adjustment method are developed to improve the quality of the reconstructed 3D structure. The reconstruction process is facilitated by using a column-sum substitution approach. This modified multilevel access scheme is adopted to arrange the order of projections so as to minimize the correlations between consecutive views within a limited angle range. In the adaptive relaxation parameter adjustment method, not only the weight matrix (as in the existing methods) but the gray levels of the pixels are employed to adjust the relaxation parameters so that the quality of the reconstruction is improved while the convergence process of the reconstruction is accelerated. In the column-sum substitution approach, the computation to obtain the reciprocal of the sum for the columns in each view is avoided so that the needed computations for each iteration can be reduced. Experimental results show that the proposed technique ASART is better based on objective quality measures than other methods, especially when data is noisy and limited in tilt angles. At the same time, the reconstruction by ASART outperforms that of simultaneous algebraic reconstruction technique (SART) in speed. (C) 2011 Elsevier Inc. All rights reserved.
关键词	Electron tomography Three-dimensional reconstruction Iterative methods ASART (adaptive simultaneous algebraic reconstruction technique)
DOI	10.1016/j.jsb.2011.06.002
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation for China[60736012] ; National Natural Science Foundation for China[61070129] ; National Natural Science Foundation for China[61003164] ; Chinese Academy of Sciences[KGCX1-YW-13] ; National Core-High Tech-basic Program[2011ZX01028-001-002]
WOS研究方向	Biochemistry & Molecular Biology ; Biophysics ; Cell Biology
WOS类目	Biochemistry & Molecular Biology ; Biophysics ; Cell Biology
WOS记录号	WOS:000293807000003
出版者	ACADEMIC PRESS INC ELSEVIER SCIENCE
引用统计	被引频次：39[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/12717
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Zhang, Fa
作者单位	1.Chinese Acad Sci, Inst Comp Technol, Beijing 100190, Peoples R China 2.Chinese Acad Sci, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China 3.Chinese Acad Sci, Inst Biophys, Beijing 100190, Peoples R China 4.Chinese Acad Sci, Grad Univ, Beijing 100190, Peoples R China 5.Shanghai Jiao Tong Univ, Dept Comp Sci & Engn, Shanghai 200030, Peoples R China
推荐引用方式 GB/T 7714	Wan, Xiaohua,Zhang, Fa,Chu, Qi,et al. Three-dimensional reconstruction using an adaptive simultaneous algebraic reconstruction technique in electron tomography[J]. JOURNAL OF STRUCTURAL BIOLOGY,2011,175(3):277-287.
APA	Wan, Xiaohua.,Zhang, Fa.,Chu, Qi.,Zhang, Kai.,Sun, Fei.,...&Liu, Zhiyong.(2011).Three-dimensional reconstruction using an adaptive simultaneous algebraic reconstruction technique in electron tomography.JOURNAL OF STRUCTURAL BIOLOGY,175(3),277-287.
MLA	Wan, Xiaohua,et al."Three-dimensional reconstruction using an adaptive simultaneous algebraic reconstruction technique in electron tomography".JOURNAL OF STRUCTURAL BIOLOGY 175.3(2011):277-287.