antiCODE: a natural sense-antisense transcripts database

doi:10.1186/1471-2105-8-319

	antiCODE: a natural sense-antisense transcripts database
	Yin, Yifei ; Zhao, Yi ; Wang, Jie ; Liu, Changning ; Chen, Shuguang ; Chen, Runsheng ; Zhao, Haitao
	2007-08-30
发表期刊	BMC BIOINFORMATICS
ISSN	1471-2105
卷号	8 页码:5
摘要	Background: Natural antisense transcripts ( NATs) are endogenous RNA molecules that exhibit partial or complete complementarity to other RNAs, and that may contribute to the regulation of molecular functions at various levels. In recent years, large-scale NAT screens in several model organisms have produced much data, but there is no database to assemble all these data. AntiCODE intends to function as an integrated NAT database for this purpose. Results: This release of antiCODE contains more than 30,000 non-redundant natural sense-antisense transcript pairs from 12 eukaryotic model organisms. In order to provide an integrated NAT research platform, efficient browser, search and Blast functions have been included to enable users to easily access information through parameters such as species, accession number, overlapping patterns, coding potential etc. In addition to the collected information, antiCODE also introduces a simple classification system to facilitate the study of natural antisense transcripts. Conclusion: Though a few similar databases also dealing with NATs have appeared lately, antiCODE is the most comprehensive among these, comprising almost all currently detected NAT pairs.
DOI	10.1186/1471-2105-8-319
收录类别	SCI
语种	英语
WOS研究方向	Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology
WOS类目	Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology
WOS记录号	WOS:000249840700001
出版者	BIOMED CENTRAL LTD
引用统计	被引频次：27[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/10910
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Chen, Runsheng
作者单位	1.Chinese Acad Med Sci, Peking Union Med Coll Hosp, Dept Liver Surg, Beijing 100730, Peoples R China 2.Chinese Acad Sci, Inst Comp Technol, Bioinformat Grp, Beijing 100080, Peoples R China 3.Chinese Acad Sci, Inst Biophys, Bioinformat Lab, Beijing 100101, Peoples R China 4.Chinese Acad Sci, Grad Sch, Beijing 100080, Peoples R China
推荐引用方式 GB/T 7714	Yin, Yifei,Zhao, Yi,Wang, Jie,et al. antiCODE: a natural sense-antisense transcripts database[J]. BMC BIOINFORMATICS,2007,8:5.
APA	Yin, Yifei.,Zhao, Yi.,Wang, Jie.,Liu, Changning.,Chen, Shuguang.,...&Zhao, Haitao.(2007).antiCODE: a natural sense-antisense transcripts database.BMC BIOINFORMATICS,8,5.
MLA	Yin, Yifei,et al."antiCODE: a natural sense-antisense transcripts database".BMC BIOINFORMATICS 8(2007):5.