TreeFam: a curated database of phylogenetic trees of animal gene families

doi:10.1093/nar/gkj118

	TreeFam: a curated database of phylogenetic trees of animal gene families
	Li, Heng ; Coghlan, Avril ; Ruan, Jue ; Coin, Lachlan James ; Heriche, Jean-Karim ; Osmotherly, Lara ; Li, Ruiqiang ; Liu, Tao ; Zhang, Zhang ; Bolund, Lars ; Wong, Gane Ka-Shu ; Zheng, Weimou ; Dehal, Paramvir ; Wang, Jun ; Durbin, Richard
	2006
发表期刊	NUCLEIC ACIDS RESEARCH
ISSN	0305-1048
卷号	34 页码:D572-D580
摘要	TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families 25 and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins from UniProt; similar to 40 - 85% of proteins encoded in the fully sequenced animal genomes are included in TreeFam. TreeFam is freely available at http://www.treefam.org and http://treefam.genomics.org.cn.
DOI	10.1093/nar/gkj118
收录类别	SCI
语种	英语
WOS研究方向	Biochemistry & Molecular Biology
WOS类目	Biochemistry & Molecular Biology
WOS记录号	WOS:000239307700123
出版者	OXFORD UNIV PRESS
引用统计	被引频次：391[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://119.78.100.204/handle/2XEOYT63/10718
专题	中国科学院计算技术研究所期刊论文_英文
通讯作者	Durbin, Richard
作者单位	1.Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England 2.Chinese Acad Sci, Beijing Inst Gen, Beijing Gen Inst, Beijing 101300, Peoples R China 3.Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China 4.Univ Aarhus, Inst Human Genet, DK-8000 Aarhus C, Denmark 5.Univ So Denmark, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark 6.Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China 7.Univ Washington, Dept Med, Genome Ctr, Seattle, WA 98195 USA 8.Joint Genome Inst, Evolutionary Gen Dept, Dept Energy, Walnut Creek, CA USA 9.Lawrence Berkeley Lab, Walnut Creek, CA USA
推荐引用方式 GB/T 7714	Li, Heng,Coghlan, Avril,Ruan, Jue,et al. TreeFam: a curated database of phylogenetic trees of animal gene families[J]. NUCLEIC ACIDS RESEARCH,2006,34:D572-D580.
APA	Li, Heng.,Coghlan, Avril.,Ruan, Jue.,Coin, Lachlan James.,Heriche, Jean-Karim.,...&Durbin, Richard.(2006).TreeFam: a curated database of phylogenetic trees of animal gene families.NUCLEIC ACIDS RESEARCH,34,D572-D580.
MLA	Li, Heng,et al."TreeFam: a curated database of phylogenetic trees of animal gene families".NUCLEIC ACIDS RESEARCH 34(2006):D572-D580.